Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1851 ATGTTCGTTCATCTTACTTCCTCCAAATTAATAGCCACGATAGCAAATACTAGGACTCTTCCTCAATTGCTCCTATGCGTGCGCCATCATTCATCTACCAAATTGTTCATCGCAGGGCTTTCCTATAACACGAATGAAACTGTCCTAAGAGACACCTTCGAACAACATGGGCAAATCATTGAAGTTAAAGTAATATGTAACCACAGGACTGGAGAGTCAAAAGGGTACGGATTTGTGAGGTTCAATTCTGAAACTGCAGCTGCCACAGCTCGCAAAGAATTGCACGGCCAGATAGTGGATGGTAGACGTATTCGAGTGGGTTATGCACACAAAGGGTAA 339 0.4336 MFVHLTSSKLIATIANTRTLPQLLLCVRHHSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKELHGQIVDGRRIRVGYAHKG* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1851 112 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 1 111 - -
Mtr4g1851 112 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 111 - -
Mtr4g1851 112 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Mtr4g1851 112 SUPERFAMILY RNA-binding domain, RBD 24 111 IPR035979 GO:0003676
Mtr4g1851 112 SMART rrm1_1 34 107 IPR000504 GO:0003723
Mtr4g1851 112 Gene3D - 16 112 IPR012677 -
Mtr4g1851 112 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1851 Mtr-Chr4 31617071 31618235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1851 33 111 Eukaryotic Initiation Factors Gene Family AT3G16380 41.772 1.15e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1851 K13195 - gmx:100306540 148.673