Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1850 ATGTCTGCAGCACTCGATATGACCCTCGACGACATCATTAAGAACAACAAAAAATCCGGATCCGGTAACCCTAGAGGAGGCCGTTCCAGACCCGGACCCGCTTCCGGACCTGGACCCGCTCGCCGTATTCTTAATCGCGCCGGTAACCGCGCCGCACCTTACTCCGCCGCTAAGGCGCCGGAGACGACGTGGCAGCATGATTTGTATGCAGATCAGCATGTAGCTGCGGCGGCGTATCCAGCAGCTCAAGGTGGTCGTGCTCCTTCTATTGAAACTGGAACCAAGCTCTATATTTCTAATTTGGATTATGGTGTTTCCAATGATGATATTAAGGAGTTGTTTTCTGAAGTTGGTGACTTGAAACGGCACGGCGTTCATTATGACAGGAGTGGCAGATCGAAGGGTACCGCAGAAGTAGTCTTCTCACGGAGACAAGATGCTGTAGCTGCTGTGAAGAGATACAACAATGTTCAACTAGATGGGAAACCAATGAAGATAGAGATTGTTGGAACCAACATTTCTACACCTGGTGCGGCTCCTGTTGTAAATGCACCCATTGGAAATTTTAATGGAATTCCTCAAAGTGGGCAAGGCAGAGTTGGAGAATTTCGAGGGCCGGGAGGAAGAGGTCAAGGCATTCGAAGAAATCGAGGACGTGGAAGAGGTAGCGGTGGACCCCGTGGTGGTGGTCGTGGTGGAGGTCGTGGTAGAGGCCGTGATGATAAAGTATCTGCAGAAGATCTTGATGCTGAGCTGGAGAAGTATCATGCTGAGGCCATGCAATTAAACTGA 792 0.5025 MSAALDMTLDDIIKNNKKSGSGNPRGGRSRPGPASGPGPARRILNRAGNRAAPYSAAKAPETTWQHDLYADQHVAAAAYPAAQGGRAPSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGAAPVVNAPIGNFNGIPQSGQGRVGEFRGPGGRGQGIRRNRGRGRGSGGPRGGGRGGGRGRGRDDKVSAEDLDAELEKYHAEAMQLN* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1850 263 Pfam C-terminal duplication domain of Friend of PRMT1 207 257 IPR025715 -
Mtr4g1850 263 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 262 - -
Mtr4g1850 263 SUPERFAMILY RNA-binding domain, RBD 90 234 IPR035979 GO:0003676
Mtr4g1850 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 171 IPR000504 GO:0003723
Mtr4g1850 263 CDD RRM_THOC4 94 168 - -
Mtr4g1850 263 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 262 - -
Mtr4g1850 263 MobiDBLite consensus disorder prediction 233 248 - -
Mtr4g1850 263 Gene3D - 77 247 IPR012677 -
Mtr4g1850 263 MobiDBLite consensus disorder prediction 192 248 - -
Mtr4g1850 263 SMART FoP_duplication_2 193 263 IPR025715 -
Mtr4g1850 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 164 IPR000504 GO:0003723
Mtr4g1850 263 MobiDBLite consensus disorder prediction 1 59 - -
Mtr4g1850 263 SMART rrm1_1 95 167 IPR000504 GO:0003723
Mtr4g1850 263 Coils Coil 245 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1850 Mtr-Chr4 31609415 31613274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1850 93 196 Eukaryotic Initiation Factors Gene Family AT1G71770 29.060 3.41e-10 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1850 4 31609415 31613274 Mtr4g1850 4 31609415 31613274 ECH