Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1840 ATGTTTTTCTGTTTCTCACACTTTGTTGTAGGTTTGAGTAGATCAGGTAAGAGTTGCAGGTTACGTTGGGTTAATTATCTTCACCCTGATCTCAAACGTGGCAAGATGACACCACAAGAAGAAAGACTTGTTATGGAACTTCACTCTAAATGGGGAAATAGATGGTCAAGAATTGCTAGAAAACTACCTGGAAGAACAGACAATGAGATTAAGAATTACTGGAGGACACACATGAGAAAAAAGAGGGCACAAGAGAAAAAACACGCAACACCTTCGATTTCATCATCACCTGATCAATCTTCTAGTTGTCAATCCTCACATTTCTCAAATAGTAACCATGGTGTGGATTCACATGCTTCCAACAAAGAGTCTGAAGAAGAAAATTACCAAGTCCAAGAAATTGAACAAGGGTACTCAATGGATGATATATGGAAAGATATTGCTATGTCTGAAGATGACATCAATGTTCTTCAACCTGATTTTGATGGAACTAGTGAAGAGAATAGCAATAATTTATCTTGTCCTATAATGCCTTCTACATCATCATGGGATTATTCATATTTAGATCCATTGTGGGTGATGGATGAAGAAGAAAGCAAGATGTTATTCCCTCCTATTGGTGACCAATATTTTTCCTTCTATGATCAACAAGGGAACACATTTCTAACTGGTTAA 675 0.3689 MFFCFSHFVVGLSRSGKSCRLRWVNYLHPDLKRGKMTPQEERLVMELHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKRAQEKKHATPSISSSPDQSSSCQSSHFSNSNHGVDSHASNKESEEENYQVQEIEQGYSMDDIWKDIAMSEDDINVLQPDFDGTSEENSNNLSCPIMPSTSSWDYSYLDPLWVMDEEESKMLFPPIGDQYFSFYDQQGNTFLTG* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1840 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 82 IPR017930 -
Mtr4g1840 224 MobiDBLite consensus disorder prediction 79 129 - -
Mtr4g1840 224 SMART sant 32 80 IPR001005 -
Mtr4g1840 224 CDD SANT 35 78 IPR001005 -
Mtr4g1840 224 Gene3D - 36 79 - -
Mtr4g1840 224 ProSiteProfiles Myb-like domain profile. 28 78 IPR001005 -
Mtr4g1840 224 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 9 206 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mtr4g1840 224 SUPERFAMILY Homeodomain-like 13 84 IPR009057 -
Mtr4g1840 224 Gene3D - 6 32 - -
Mtr4g1840 224 MobiDBLite consensus disorder prediction 89 117 - -
Mtr4g1840 224 Pfam Myb-like DNA-binding domain 33 77 IPR001005 -
Mtr4g1840 224 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 9 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1840 Mtr-Chr4 31494622 31496492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1840 5 201 MYB Transcription Factor Family AT5G59780 57.071 7.55e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr4g1840 Myb_DNA-binding 9.3e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1840 4 31494622 31496492 Mtr4g1840 4 31494622 31496492 ECH
Mtr4g1840 4 31494622 31496492 Mtr2g3319 2 47279597 47281017 PCT