Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1836 ATGGCCCCAAAAGGTGATGTTTCTAAGAAGACCGATCCAAAGGCACAGGCCTTGAAAGCTGCCAAGGCAGTCAAGTCAGGCACTGCTATTAAGAAGGCAAAGAAGATTAGAACAACTGTAACTTTCCATCGCCCAAAGACACAAACAAAGGATAGGAACCCCAAATATCCTCGCATCAGTGCCACACCAAGAAACAAGCTTGACCACTATCAGATTTTGAAGTTCCCACTCACCACTGAGTCCGCAATGAAGAAAATTGAGGATAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCTGATAAGAAAAAGATTAAGGATGCAGTGAAGAAAATGTATGACATCCAGGCAAAGAAGGTTAACACCTTGATCAGGCCCGATGGTACCAAGAAGGCCTATGTTAGGTTGACACCTGATTACGATGCATTGGATGTAGCAAACAAGATTGGGATCATCTAA 459 0.4314 MAPKGDVSKKTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1836 152 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Mtr4g1836 152 Hamap 50S ribosomal protein L23 [rplW]. 72 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Mtr4g1836 152 Gene3D - 33 152 IPR012677 -
Mtr4g1836 152 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 69 145 IPR012678 GO:0003735|GO:0005840|GO:0006412
Mtr4g1836 152 Pfam Ribosomal protein L23 72 134 IPR013025 GO:0003735|GO:0005840|GO:0006412
Mtr4g1836 152 TIGRFAM uL23_arch: ribosomal protein uL23 76 152 IPR019985 GO:0003735|GO:0005840|GO:0006412
Mtr4g1836 152 MobiDBLite consensus disorder prediction 1 16 - -
Mtr4g1836 152 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 152 - -
Mtr4g1836 152 MobiDBLite consensus disorder prediction 1 22 - -
Mtr4g1836 152 ProSitePatterns Ribosomal protein L23 signature. 130 145 IPR001014 -
Mtr4g1836 152 MobiDBLite consensus disorder prediction 42 61 - -
Mtr4g1836 152 Pfam Ribosomal protein L23, N-terminal domain 14 61 IPR005633 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1836 Mtr-Chr4 31469584 31471991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1836 35 152 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 92.373 3.93e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1836 K02893 - rcu:8272233 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1836 4 31469584 31471991 Mtr4g1836 4 31469584 31471991 ECH
Mtr2g3316 2 47259549 47261928 Mtr4g1836 4 31469584 31471991 ECH
Mtr2g3316 2 47259549 47261928 Mtr4g1836 4 31469584 31471991 PCT