Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1801 ATGAAACAGAAAGTGAAAGTGATGGAACCATTTACAAGAGACCATCGAGGCTCACTTGAAGTCTTCAATCCATCTTCATCTGACGACAACAACAACGAGAATCCAAATCCAATCAATTCATGGAACACTTGGACAACAAACTCACGACCCAACGAAACTCCACAACAACCGACGCGTGACTCCATCAACTCTGATGAAGTCCCCGTCGCCACTTCCTGGATGGCACTCAAAGAAACCACCTCTCCGTCAGTTTCCAACGAACCTGGCTCCGCTGCAGCACAACGAGCAGCAGAGTGGGGGTTAGTGTTGAAAACTGATTCGGAGACGGGGAAGCCACAAGGAGTGGCAGTTAGAAGCTCCGGTGGTGGTTCAAGGAGGGACTCGAACAATTCAATGAGAAGTTCCGGTGAAAGTTCCGATGAGGGAAGGGAGTTTAGAGGAATCCCAAGAGTTTCGGAGGATTTGAGAGATGCTCTATCAGCATTTCAACAGACATTTGTTGTTTCTGATGCTACTAAACCGGATTACCCGATCATGTATGCTAGTGCTGGGTTTTTTAACATGACAGGGTATACTTCCAAAGAGGTTATAGGAAGAAACTGTCGATTTATGCAGGGAGCTGACACAGATCCGAATGATGTGGCAAAGATAAGAGAATCACTAGCAGCAGGAACAACTTACTGTGGAAGATTACTAAATTACAAGAAAGATGGGACACCATTTTGGAACCTTCTCACTATTGCTCCCATCAAGGACGAAAATGGCAAAATCCTCAAACTTATCGGAATGCAAGTGGAAGTTAGCAAGCATACTGAGGGGACCAAGGAGAAGATGTTACGTCCCAATGGATTGCCCAAATCCTTGATTCGATATGATGCTCGTCAGAAAGAGAAGGCAAACTCATCAGTAAATGAGTTGGTAGAGGCAGTAAGCAGAAGACCAAGGTCACTCAGTGAATCAGCAAACCGACCTCCCTTTATAAAAGTGCCAACAAAAACAGTACATAGTAGTGATCATGCAACACAAGAACTTCAAAAAACACCATCCAAGTCATCAAGGAGAAGAAAATCCGAGAGTACTTTGCCTTCATTTCGACGCAAATCACATTCTGGAGGAGGAGGAGATACTCATTTTAATTCAATGCATCCCATCACTGAGACCCCTGAAAATAAAATCAACTCGCGTCGCCGTTCTTTCATGGGGTTCATAAGGAAAAGTTTGTCAAACAATGAAAGCTTCAATGATGAACAGCTTGCTGATGATGAGGATAGCTCTGAGGATGATGAAAGGCCTGATAGTGTTGACGAGAAAATTAAAAAGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACTACACTTGAACGTATCGAGAAGAACTTTGTCATTACTGATCCTAGGCTCCCAGATAACCCCATTATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAGTATTCTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTTTGCAAGGACCCGAAACTGATCCTGCAACAGTGAAAAAAATTAGACAGGCTATTGACAATCAAACAGAAGTTACTGTGCAGCTTATTAACTATACAAAGAGTGGTAAAAAGTTCTGGAACCTGTTCCATTTGCAGCCAATGCGTGATCAGAAGGGAGAGGTACAGTATTTTATTGGAGTTCAACTTGATGGTAGTCAACATGTGGAGCCTCTTCACAATCGCATTGCAGAAGATACAGCAAAAGAGGGAGAAAATTTGGTAAAGAAAACTGCAGAAAATGTTGATGATGCATTGAGAGAACTCCCAGATGCTAATATGAAACCAGAAGATCTATGGATGAATCATTCAAAAGTGGTTCACCCTAAACCTCATAGGAGGGATGATGCTGCTTGGAGAGCTATTCAGAAGATCATGGAGAGTGGAGAACAGATAGGCTTGAAGCATTTTAAGCCAATTAAACCTTTAGGGTCAGGAGACACTGGCAGTGTCCATCTTGTGGAGCTATGTGGAACTGATCAACATTTTGCCATGAAGGCTATGGAGAAGGCTGTTATGCTCAACCGTAATAAGGTGCATAGAGCTTGCACAGAGAGAGAAATCCTTGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACGAAAACACATATTTGTTTGATAACTGATTACTGCCCTGGAGGAGAATTGTTCCTGCTGCTCGAACGCCAGCCAGCAAAGGTTCTCAAGGAAGATGCAGTGAGATTTTATGCCGCTGAAGTAGTTACTGCATTGGAGTACCTTCATTGTCAAGGGATAATATATAGGGATTTGAAGCCAGAAAATGTGTTACTACAGAGAAGTGGACATGTGTCTCTAACAGATTTTGATTTGTCCTGTTTAACATCTTGCAAACCACAGCTTTTAATTTCAACTACAAATGACAAGAAGAAAGGACAACAAGCTCCAATATTTATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATCACTGGTTCTGGCCATACTAGTGCTGTGGATTGGTGGGCTCTTGGAATTCTTCTATATGAAATGATTTATGGATATACACCATTCAGGGGAAAGAATAGGCAAAGAACATTTGCAAATATTCTCCACAAGGATCTTAGATTTCCCAAAAATAAACAGGTTAGTCTCAGTGCAAAGCAGTTAATTTATCGCTTGTTGCAAAGAGATCCAACTAGCAGGTTGGGTTCAAATGGAGGAGCAAATGATATCAAAAACCATCCCTTCTTCAGGGGTATCAATTGGGCCCTAGTCCGATGCACGAAACCTCCTGAGCTTGATGCTCCTCTCTTTGATACAAATGAAGAAGAAAAGGGAAAGGAAAAGGAAGACAAATATGTAGATATTGGACAAGAGAATATGAGTGTCTTCTGA 2934 0.4209 MKQKVKVMEPFTRDHRGSLEVFNPSSSDDNNNENPNPINSWNTWTTNSRPNETPQQPTRDSINSDEVPVATSWMALKETTSPSVSNEPGSAAAQRAAEWGLVLKTDSETGKPQGVAVRSSGGGSRRDSNNSMRSSGESSDEGREFRGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRFMQGADTDPNDVAKIRESLAAGTTYCGRLLNYKKDGTPFWNLLTIAPIKDENGKILKLIGMQVEVSKHTEGTKEKMLRPNGLPKSLIRYDARQKEKANSSVNELVEAVSRRPRSLSESANRPPFIKVPTKTVHSSDHATQELQKTPSKSSRRRKSESTLPSFRRKSHSGGGGDTHFNSMHPITETPENKINSRRRSFMGFIRKSLSNNESFNDEQLADDEDSSEDDERPDSVDEKIKKREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKIRQAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIAEDTAKEGENLVKKTAENVDDALRELPDANMKPEDLWMNHSKVVHPKPHRRDDAAWRAIQKIMESGEQIGLKHFKPIKPLGSGDTGSVHLVELCGTDQHFAMKAMEKAVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHICLITDYCPGGELFLLLERQPAKVLKEDAVRFYAAEVVTALEYLHCQGIIYRDLKPENVLLQRSGHVSLTDFDLSCLTSCKPQLLISTTNDKKKGQQAPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMIYGYTPFRGKNRQRTFANILHKDLRFPKNKQVSLSAKQLIYRLLQRDPTSRLGSNGGANDIKNHPFFRGINWALVRCTKPPELDAPLFDTNEEEKGKEKEDKYVDIGQENMSVF* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1801 977 CDD STKc_phototropin_like 644 949 - -
Mtr4g1801 977 SMART serkin_6 646 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g1801 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 461 560 IPR035965 -
Mtr4g1801 977 Pfam PAS domain 172 268 IPR000014 -
Mtr4g1801 977 Pfam PAS domain 468 560 IPR000014 -
Mtr4g1801 977 MobiDBLite consensus disorder prediction 415 430 - -
Mtr4g1801 977 MobiDBLite consensus disorder prediction 410 444 - -
Mtr4g1801 977 Gene3D Phosphorylase Kinase; domain 1 645 729 - -
Mtr4g1801 977 MobiDBLite consensus disorder prediction 348 363 - -
Mtr4g1801 977 SMART pac_2 522 564 IPR001610 -
Mtr4g1801 977 SMART pac_2 228 270 IPR001610 -
Mtr4g1801 977 MobiDBLite consensus disorder prediction 122 136 - -
Mtr4g1801 977 PANTHER FLIPPASE KINASE 1-RELATED 101 964 - -
Mtr4g1801 977 MobiDBLite consensus disorder prediction 19 69 - -
Mtr4g1801 977 SMART pas_2 447 516 IPR000014 -
Mtr4g1801 977 SMART pas_2 153 223 IPR000014 -
Mtr4g1801 977 Gene3D PAS domain 433 598 - -
Mtr4g1801 977 MobiDBLite consensus disorder prediction 104 145 - -
Mtr4g1801 977 Gene3D Transferase(Phosphotransferase) domain 1 730 942 - -
Mtr4g1801 977 ProSiteProfiles PAS repeat profile. 151 221 IPR000014 -
Mtr4g1801 977 PANTHER PHOTOTROPIN-1 101 964 - -
Mtr4g1801 977 Gene3D PAS domain 165 322 - -
Mtr4g1801 977 MobiDBLite consensus disorder prediction 950 977 - -
Mtr4g1801 977 MobiDBLite consensus disorder prediction 293 395 - -
Mtr4g1801 977 MobiDBLite consensus disorder prediction 950 969 - -
Mtr4g1801 977 SUPERFAMILY Protein kinase-like (PK-like) 630 949 IPR011009 -
Mtr4g1801 977 Coils Coil 577 597 - -
Mtr4g1801 977 ProSitePatterns Protein kinases ATP-binding region signature. 652 675 IPR017441 GO:0005524
Mtr4g1801 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 172 264 IPR035965 -
Mtr4g1801 977 CDD PAS 460 560 IPR000014 -
Mtr4g1801 977 ProSiteProfiles PAC domain profile. 519 573 IPR000700 -
Mtr4g1801 977 TIGRFAM sensory_box: PAS domain S-box protein 470 560 IPR000014 -
Mtr4g1801 977 TIGRFAM sensory_box: PAS domain S-box protein 178 272 IPR000014 -
Mtr4g1801 977 Pfam Protein kinase domain 648 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g1801 977 ProSiteProfiles PAS repeat profile. 445 518 IPR000014 -
Mtr4g1801 977 CDD PAS 178 267 IPR000014 -
Mtr4g1801 977 MobiDBLite consensus disorder prediction 1 69 - -
Mtr4g1801 977 MobiDBLite consensus disorder prediction 1 16 - -
Mtr4g1801 977 ProSiteProfiles Protein kinase domain profile. 646 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g1801 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Mtr4g1801 977 ProSiteProfiles PAC domain profile. 225 279 IPR000700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1801 Mtr-Chr4 30999781 31013397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1801 13 974 AGC Kinase Gene Family AT3G45780 69.031 0.0 1338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Mtr4g1801 Pkinase 2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1801 K20715 - gmx:100804524 1452.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1801 4 30999781 31013397 Mtr4g1801 4 30999781 31013397 ECH
Mtr2g3299 2 47058360 47071949 Mtr4g1801 4 30999781 31013397 PCT