Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1789 ATGTTAGATCTTAATCTAAACGATTCAAACTCAACTGATTCAACTCAGAATCAGAACCATAACTCGCCGATGATTTCAAAGAACTTTCCGCAAACAGTGGATGAATCAGGAACATCGAATTCCTCGATCGTCAATGCAGACGGTGACGAAGACTCGTGTTCCACGCGCGATTTCACTTTGAGTTTCGATATTCTGAAAACGGAAGGTTCAAATTCAAACAACGTCGTAACAAAGGAGTTTTTCCCTGTGAAGTTGCAAGCTACGTCGTCGTCATTTTCGATGAAGAACGGTTCGGTTGATTTTTCGATTAATCAAAACGAAGAGATGAAGATTGTTCAAGCGCCACAGCAAGTGAAGAAGAGTAGAAGAGGACCTAGGTCTCGTAGTTCGCAATACAGAGGTGTTACGTTTTATCGCAGGACTGGTAGATGGGAATCGCATATCTGGGATTGTGGGAAACAAGTTTATTTAGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTTAGGGGAGTTGGTGCTGACATAAATTTCAATTTGAATGATTACGATGATGATCTTAAACAGACGAAGAATTTATCAAAAGAGGAGTTCGTGCAAATACTTCGTCGACAAAGCAATGGTTTCTCAAGAGGGAGTTCGAAGTACAGAGGAGTAACACTGCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAAGCAGCTATCCAAAATAATGGAAGGGAAGCAATGACTAATTTTGAGGCCAGTACATATGAAGGAGAGATGAAATCTGCAGCCATCAATGAGGGCGGCAGTCAAAATCTTGATCTCAATTTGGGCATAGCCACGCCAGGGCCTAGTCCCAGAGAAAATTGGGGGCAACTTCACTTCCCCTCATCTGTCCCTTACACTATGCAAGCTGGAAGAAGTTCAAAGATGGAAACCAATGTTTCAGGAATCGGTGATCCATCTTTGAAAAGGCTATTAGCAACTGAAGAGCGTCATTCTTTATGGAATGGCATGTATCCCGCTTTCTTTTCCAATGAGGAAAGAGCAGATAGCATCAACAAAGCTCCTCCAAAAGGACTCCCCAATTGGGCGTGGCAACCTCATGGCCTTGTCACTGCTAGCCCAGTGCCACCGGTCTCTGCAGCAGCAGCAGCATCATCAGGATTCTCCATTAATTCAGCTCCCATTCCATCGACTCGCATGTTCCCACCAAGATCTATGAACTCAATTCCCCAGAGTCTCTATTTTACTTCGCCCAATGCACCTAACGGCAACAGATCTCCATACTATTATCAGGTTAAGCCACCGCAAGCACCGACCTAG 1365 0.4432 MLDLNLNDSNSTDSTQNQNHNSPMISKNFPQTVDESGTSNSSIVNADGDEDSCSTRDFTLSFDILKTEGSNSNNVVTKEFFPVKLQATSSSFSMKNGSVDFSINQNEEMKIVQAPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVGADINFNLNDYDDDLKQTKNLSKEEFVQILRRQSNGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIQNNGREAMTNFEASTYEGEMKSAAINEGGSQNLDLNLGIATPGPSPRENWGQLHFPSSVPYTMQAGRSSKMETNVSGIGDPSLKRLLATEERHSLWNGMYPAFFSNEERADSINKAPPKGLPNWAWQPHGLVTASPVPPVSAAAAASSGFSINSAPIPSTRMFPPRSMNSIPQSLYFTSPNAPNGNRSPYYYQVKPPQAPT* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1789 454 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 423 - -
Mtr4g1789 454 ProSiteProfiles AP2/ERF domain profile. 131 187 IPR001471 GO:0003700|GO:0006355
Mtr4g1789 454 CDD AP2 222 267 IPR001471 GO:0003700|GO:0006355
Mtr4g1789 454 MobiDBLite consensus disorder prediction 427 441 - -
Mtr4g1789 454 SMART rav1_2 131 193 IPR001471 GO:0003700|GO:0006355
Mtr4g1789 454 SMART rav1_2 223 271 IPR001471 GO:0003700|GO:0006355
Mtr4g1789 454 MobiDBLite consensus disorder prediction 427 454 - -
Mtr4g1789 454 MobiDBLite consensus disorder prediction 1 51 - -
Mtr4g1789 454 SUPERFAMILY DNA-binding domain 222 266 IPR016177 GO:0003677
Mtr4g1789 454 Pfam AP2 domain 131 179 IPR001471 GO:0003700|GO:0006355
Mtr4g1789 454 Gene3D AP2/ERF domain 130 189 IPR036955 GO:0003700|GO:0006355
Mtr4g1789 454 MobiDBLite consensus disorder prediction 1 49 - -
Mtr4g1789 454 SUPERFAMILY DNA-binding domain 130 188 IPR016177 GO:0003677
Mtr4g1789 454 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1789 Mtr-Chr4 30823487 30827550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1789 1 413 AP2-EREBP Transcription Factor Family AT5G60120 45.770 9.42e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g1789 AP2 6.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1789 K09284 - gmx:100788303 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1789 4 30823487 30827550 Mtr4g1789 4 30823487 30827550 ECH
Mtr2g3193 2 45750382 45754519 Mtr4g1789 4 30823487 30827550 PCT