Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1781 ATGAAGCGTGCGAGAAGCACATACGAGTCTAGTTCTTCAAGGGTTTCGCCATCTCTGGAAGCAGGAATCATCAAAAAACTTCGGTTAGAGAATTTTATGTGCCATTCGAATCACGAAACTCAATTCGGAAGCAACGTTAATCTCATCACTGGCCAAAATGGAAGTGGTAAAAGTGCAATACTTACTGCATTGTGTGTTGCATTTGGTTGTCGAGCTAAAGGCACGCAAAGAGCATCTACTTTGAAGGATTTCATTAAAACTGGTTCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAGGGAGAGGATGCTTTCAAGCCTGAAATATATGGTGATGTTATCATTGTAGAACGTAGGATATCTGAATCCTCAAGCTCTATTACATTGAAAGATCAACAAGGGAAGAAAGTTTTCAGTCGAAAAGCAGATCTACAAGAAATCGTCGAACATTTCAACATTGATGTGGAGAACCCGTGTGTGATTATGAGTCAAGATAAAAGCAGAGAATTTTTGCATTCTGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGAACTTCTTGAAAGCATTTCGGCTGAAATAACTAAGGCACGTGTAATAGTTGAAGATTTAGAGGCTGCAATAAGACCTATAGAGAAAGAACTCAATGAGCTGGATGCCAAAATTAAAATGATGGAACATGTTGAACGAATTGCTGTAGAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGAAACTTGAGGATCAAAGAGTAAGGATTGAAAAGCTGAAGAGTCGGGTTCCTATATGCCAAGCTAGGATAGATAAACAACTGCATCAGCTTGAAAAATTAAGCGAAAGCTACTCTAGGAAGAAAGCTGAAATTAAAAGTATGATGACATCACAAGTTAAGCAAATGAAGGAAAGTTTAAGTCACTCTTTGTCATCGGCAAAAAAAGAAGCATTTGAACTTCAGCGAGACTGCAAATGCAAAGCTAGTAATGTACAGAAGATGGTACAACAGGTCAAAAAGCTTGAACTACAAATGCAGGGTATTCATGAGCAGCATGTGAAAAATACCCAGGCCGAAGAATCTGACATGGAGGAAAAACTGAAGGGGCTTCGAGAGGAGGTTGATGCAGCTGAGTTTGAATTGAAAAGATTGAAAAAAGAAGAGGATATATTAATGACCAACATTGATAAGCAAAAGGAAGAAATAAGCAGTATTGCTGCTAAGATCCAAGATCATGAAAGTAAATATAATGGTATCATGCATAATGTTCGTGATCTTCAACGACAACAAAGCAACAAGATCACTGCTTTTGGAGGAAATAAAGTGCTGAGTCTGTTACGTATAATTGAGAGATGTCATCAAAGGTTTAGGATGCCTCCCATTGGTCCAATTGGGGCCCATCTGAAGTTGCATAATGGTAATAAATGGGCGGTTGCTGTTGAATATGCCATTGGGAGATTGTTCAATTCTTTTATAGTGACTGATCACAAGGATTTCCGACTTCTGAAACAATGTGCAAAGGAAGCAGACTATGGTCAACTTAAAATTATTATTTATGATTTTTCAACCCCAAGGTTGATGATACCAGAGCGCATGCGTCCTAATACAAACCATCCATCAATTCTTTCCATCTTACAATGCGAGAATGACACCGTGCTTAATGTCTTAGTGGATCAGGGAAATGTTGAGAGGCAAGTGCTTGTTAACGACTATGGTATTGGGAAAGTGATTGCCTTTGAGAAAAGGATCCAAAATCTGAAGGAGGTCTTTACTGTGGAGGGATATAAAATGTTTTCTCGAGGTTCGGTAGAGACAATTCTTCCTCCAAGGAGGAATCAATTATATGGTCGTCTAAGTAGTTCTGTTGAAGCCGACATTGAGAAACTTAGTAATGATGCATCGAATGAACAAAAAACAGCAAATGACTATAGAAGTGATAAAAGAAAGGCAGAGGTCAAACTTGAGGATCTGTACAAGAAGATGAATCCTATAAAGAGATTGTGTTTACATGCTGGAAAAGATGTTGCTTCTAAGAAGCTAACTTTGGAGGATGAAATGCGTCAACAAGCGACTGAAAGTAGCTCGGCACCTTTGTCCTCGGTTGATGAGATTGTTGAAGAAATTTCAGAAATAAACCAAAAAATGAAAGAAGAGCAGGTGTTGTTAGAAGGCCTTGAGCAGAGGAGGTATGAAGCAGAGGGAAAAGCAGATGATCTGAAAGTAAAATTTGACGAACTGTGTGAATCTGCGAACACTGAACTTGCTTCCCTTGAGAAATCTGAGAATGAACTTATAGAGATTGAGAGACAAATAGATGCAGCGACGGAGGCGAAGGATCATTATGAAAATTTCATGAAAACAAATGTCCTACATGATATTAAGGAGGCAGAGGAACACTATCTGGAGCTTACAAAAAGCCGTGAGGATAATGTTAAAAAGGCTTCCATAATTTGCCGTCAGGATGACCTTGCTTCGCTAGGAGGTTGTGATGGGAAAACCCCAGAGCAAATCAGTGCTGAAATAGAAAGTCTAAATCACACACTTAGGCGTGAGAGCAAAAGGTATTCCGAATCAATTGATGATCTAAGGATGCTATATGCGAAAAAAGAACGAAAAATTATAAAAAGGCAGCAAGTTTACAAAGCCCTTCGACAGAAATTGAATGCTTGCCATAATGCTTTAGAGTTTCGAAGGAGAAAATTTCAGACAAATGCAACTAATCTCAAGCATCAGCTTTCTTGGAAATTTAACGGCCTTTTGAAAAGGAAGGGGATCAGTGGACTTATCAAAGTTGATTATGACGAAACTACCTTATCGATTGAGGTACAAATGCCCCAAGATACATCAAACAGAGCTGTTCGAGACACAAGGGGACTTTCAGGCGGGGAGCGCTCTTTTTCAACTTTGTGCTTTGCATTAGCCCTTCATGAAATGACGGAGGCCCCATTTAGAGCAATGGATGAATTTGATGTCTTTATGGATCCAGTAAGCAGAAAAATTAGCATGGACACTCTGATTGATTTTGCTGAGGCACAAGGATCCCAATGGATATTGATCACCCCGAATGATACTAGCTTGGTGAAGGGAGGGAACAGGGTTAAGAAGATGCAAATGGCAGCTCCCCGTGCTTATCAAATGTGA 3186 0.3923 MKRARSTYESSSSRVSPSLEAGIIKKLRLENFMCHSNHETQFGSNVNLITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGSSNAVIHVEIQNEGEDAFKPEIYGDVIIVERRISESSSSITLKDQQGKKVFSRKADLQEIVEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNELLESISAEITKARVIVEDLEAAIRPIEKELNELDAKIKMMEHVERIAVEVQQLKKKLAWSWVYDVDKKLEDQRVRIEKLKSRVPICQARIDKQLHQLEKLSESYSRKKAEIKSMMTSQVKQMKESLSHSLSSAKKEAFELQRDCKCKASNVQKMVQQVKKLELQMQGIHEQHVKNTQAEESDMEEKLKGLREEVDAAEFELKRLKKEEDILMTNIDKQKEEISSIAAKIQDHESKYNGIMHNVRDLQRQQSNKITAFGGNKVLSLLRIIERCHQRFRMPPIGPIGAHLKLHNGNKWAVAVEYAIGRLFNSFIVTDHKDFRLLKQCAKEADYGQLKIIIYDFSTPRLMIPERMRPNTNHPSILSILQCENDTVLNVLVDQGNVERQVLVNDYGIGKVIAFEKRIQNLKEVFTVEGYKMFSRGSVETILPPRRNQLYGRLSSSVEADIEKLSNDASNEQKTANDYRSDKRKAEVKLEDLYKKMNPIKRLCLHAGKDVASKKLTLEDEMRQQATESSSAPLSSVDEIVEEISEINQKMKEEQVLLEGLEQRRYEAEGKADDLKVKFDELCESANTELASLEKSENELIEIERQIDAATEAKDHYENFMKTNVLHDIKEAEEHYLELTKSREDNVKKASIICRQDDLASLGGCDGKTPEQISAEIESLNHTLRRESKRYSESIDDLRMLYAKKERKIIKRQQVYKALRQKLNACHNALEFRRRKFQTNATNLKHQLSWKFNGLLKRKGISGLIKVDYDETTLSIEVQMPQDTSNRAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDPVSRKISMDTLIDFAEAQGSQWILITPNDTSLVKGGNRVKKMQMAAPRAYQM* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1781 1061 Pfam RecF/RecN/SMC N terminal domain 24 1053 IPR003395 -
Mtr4g1781 1061 CDD ABC_SMC6_euk 24 178 - -
Mtr4g1781 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 1051 IPR027417 -
Mtr4g1781 1061 Gene3D - 23 222 IPR027417 -
Mtr4g1781 1061 SUPERFAMILY Smc hinge domain 432 616 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mtr4g1781 1061 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 9 1058 - -
Mtr4g1781 1061 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 9 1058 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Mtr4g1781 1061 Coils Coil 346 366 - -
Mtr4g1781 1061 Coils Coil 197 231 - -
Mtr4g1781 1061 CDD ABC_SMC6_euk 959 1058 - -
Mtr4g1781 1061 Coils Coil 368 444 - -
Mtr4g1781 1061 Coils Coil 285 305 - -
Mtr4g1781 1061 Coils Coil 762 792 - -
Mtr4g1781 1061 Gene3D - 802 1055 IPR027417 -
Mtr4g1781 1061 Coils Coil 716 757 - -
Mtr4g1781 1061 Coils Coil 641 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1781 Mtr-Chr4 30710026 30733688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1781 21 1058 Structural Maintenance of Chromosomes family AT5G07660 55.192 0.0 1124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1781 K22804 - gmx:100816916 1499.95