Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1774 ATGGACTCAACCCAAGAACAAGAAGACTTTCACTTCTTGTTAACGGCGCAACGCCACGAACTCACGGTGGCGGAATCCATGGAATCCGATCTCGATTTCGCTTACAATCTCCAGCTCCAAGAAGCCCTCTCCGCTTCCCTCACCGACCAACCTTCCTCCTCCACCGCCGTCTTTCTCGAAGACCCATCCATCTCCGACTCCGTTTTCAACGCTAACTCTCTCCAGCTACAAGAGCTCGAAAAAATGGCAATCGAGATGAACGACAGATTACAAAGCGAGAGAGCAATGCGTGAAGCGAGAGACGATCTCAACCGTCGGATTCATGATCAGAAAATGGCGTCGGAGATTTTCAACATGCCGGTGAAGGATTGGGATGAATGGGGAGATAATTTCGAGAAACCGTTTGGTGAAGGGAGTTCTTCGGGTTCGACGATGCGGAACAATGAAGGTCCGGTTGTTAGGGTTTATTTTAAGGGTTTAGTGAGTGAGGAGAGTGTGAGAGGTGAGAGTGTTTCTTTGGCTGGGATTGGTGTTGCTGTTTGTGATGATGAGGATAATTTGATATTGGAAATTTCTAAGACTGTTGATGGGAATGAGAGTCGTAAAATTGCTGTGGAGCTTATGGCTTTGATTGAAGGTTTCAATGCTGTTATTGCTTTGGATTTGAAGCGTGTTATTTATTTTGGTGATTATTATACACTTTTTCAACATTTGAGTGGAAAATGGGCTTCGAAACAGCCGAAGGTCGCTGCACTACTTAATGAGGTGAATATGCTTCAAAGAAAATTTGCATACTGCAGTCCAAGGCTTGTGGCGAGGCATGATCTGAAATTTGCATTTAAGCTTGCAAGAGATGCAATTGTTTCTCAATCCATGAGGCCTGCTGAATCTAGCGGTGTAAAGAGTCTGAATGAAACTTGTGTCATTTGTTTGGAGGATAGTGATGTTAGTCAATTTTTTTCAGTTGATGGCTGTCAACACAGGTATTGCTTTTCTTGCATGAGGCAACATGTGGAGGTGAAGTTGCTCCATGGAATGGTGCCAATATGCCCTCATGAGGGATGCAAGAATGAACTTCTAGTTGACAGTTGCCGGAAATTCTTGACTTCTAAATTAGTTGAAACCATGCAGCAACGAAATTTGGAAGCATCAATTCCACATACTGAGAAAATTTACTGTCCTTATCCAAGATGCTCTGCATTGATGTCAAAAACTGAAGTTTTAGATTACTCCAAAAGTCTTATGGGCTCTGTACAATCAATGCCCAAGAAATGCGTAAAATGTCATGGTCTTTTCTGTTTCAGCTGCAAGGTCCCGTGGCATAGTGGTATGACATGTTATACCTACAAAAGGTTGAATCCTAACCCTCCATCAGAAGATGTGAAGTTGAAGTCTCTGGCATCAAGGAGTCTTTGGAAGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTACCACATGACATGCAGATGCGGGTTCGAATTTTGCTATAAATGTGGAGCTGAGTGGAAGGATAAAAAAGCAACATGTTCTTGTCCACTTTGGGAAGAGGACAATATTTGGTTACAAGATCGTGATGATGAAGAGGACGACAGTTCTGATGATGATTTTTAG 1626 0.4305 MDSTQEQEDFHFLLTAQRHELTVAESMESDLDFAYNLQLQEALSASLTDQPSSSTAVFLEDPSISDSVFNANSLQLQELEKMAIEMNDRLQSERAMREARDDLNRRIHDQKMASEIFNMPVKDWDEWGDNFEKPFGEGSSSGSTMRNNEGPVVRVYFKGLVSEESVRGESVSLAGIGVAVCDDEDNLILEISKTVDGNESRKIAVELMALIEGFNAVIALDLKRVIYFGDYYTLFQHLSGKWASKQPKVAALLNEVNMLQRKFAYCSPRLVARHDLKFAFKLARDAIVSQSMRPAESSGVKSLNETCVICLEDSDVSQFFSVDGCQHRYCFSCMRQHVEVKLLHGMVPICPHEGCKNELLVDSCRKFLTSKLVETMQQRNLEASIPHTEKIYCPYPRCSALMSKTEVLDYSKSLMGSVQSMPKKCVKCHGLFCFSCKVPWHSGMTCYTYKRLNPNPPSEDVKLKSLASRSLWKQCVKCNHMIELAEGCYHMTCRCGFEFCYKCGAEWKDKKATCSCPLWEEDNIWLQDRDDEEDDSSDDDF* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1774 541 ProSiteProfiles Zinc finger RING-type profile. 307 351 IPR001841 -
Mtr4g1774 541 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 31 527 - -
Mtr4g1774 541 ProSiteProfiles TRIAD supradomain profile. 303 526 IPR044066 -
Mtr4g1774 541 Gene3D - 444 540 - -
Mtr4g1774 541 SUPERFAMILY RING/U-box 305 386 - -
Mtr4g1774 541 Coils Coil 76 96 - -
Mtr4g1774 541 Gene3D - 153 293 IPR036397 GO:0003676
Mtr4g1774 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 388 IPR013083 -
Mtr4g1774 541 Pfam IBR domain, a half RING-finger domain 377 446 IPR002867 -
Mtr4g1774 541 Pfam IBR domain, a half RING-finger domain 463 514 IPR002867 -
Mtr4g1774 541 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 31 527 IPR031127 GO:0004842|GO:0016567
Mtr4g1774 541 Pfam Reverse transcriptase-like 172 286 IPR002156 GO:0003676|GO:0004523
Mtr4g1774 541 SMART ibrneu5 459 516 IPR002867 -
Mtr4g1774 541 SMART ibrneu5 374 446 IPR002867 -
Mtr4g1774 541 ProSitePatterns Zinc finger RING-type signature. 325 334 IPR017907 -
Mtr4g1774 541 SUPERFAMILY RING/U-box 461 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1774 Mtr-Chr4 30627177 30631887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1774 154 505 C3H Transcription Factor Family AT2G19610 35.475 1.17e-66 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1774 - - aprc:113858620 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1774 4 30627177 30631887 Mtr4g1774 4 30627177 30631887 ECH