Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1764 ATGGATTTGGTAGCCGGTATCAAGGAAAAATTAACATATTTCCGTATAAAAGAGCTCAAGGATGTGCTGACTCAGTTAGGACTTTCAAAACAGGGAAAGAAGCAGGATCTCGTCGATCGGATATTATCCATTCTCTCAGATGAGCAAGTTTCCAAAATATGGGCCAAGAAGAATGCTGTTGGGAAAGAGCAGGTGGCAAAATTGGTGGATGACACATATAGGAAAATGCAGATATCGGGAGCCACTGATCTAGCATCAAAGGGTCAGGTTGTGTCAGATAGTAGTAATGTGAAGGTTAAAGCTGAAGTTGAAGATTCCTTTCAAATTCAAACTACTACAACTACAAAGATTCGCTGTCTCTGTGGAAGTACATTGGAAACAGGGGATTTGATCAAGTGTGATGATGCCAGATGCCAAGTGTGGCAACACATCAGCTGTGTTATTATTCCAGAGAAACCTATGGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAACTATGTCGACTCAGCCGTGCAGACCCGTTTTGGGTTTCAGTATCTCATCCTTTGTTACCTGTAAAGTTGGCCACAACCAGTATTCCAACTGATGGTACCAACCCAGTGCAGTGCGTGGAGAGAACATTTCAACTCACAAGAGCAGACAAGGACATGGTATCAAAACAAGAATTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATTCAATGGCCACAGTATACAGACCTTGCAGTTAATGGTCTTCCTATTCGAACAACTACTAGACCCGGTTCACAGTTGCTTGGAGCTAACGGTCGTGATGATGGTCCAATTATCACGCCGCATACAAAAGACGGAATTAATAAGATTTCCTTAACAGTATGTGATGCTCGCATTTTCTGTTTAGGTGTTCGAATTGTTAGAAGGCGCAGTTTGCAACAGATCCTAAACTTAATTCCAAAGGAGTCTGACGGTGAGCCTTTTGAAGATGCTCTTGCACGCGTCTGTCGTTGTGTTGGGGGTGGAAATGCAGCTGACAATGCTGATAGCGACAGTGATTTGGAAGTGGTTTCAGATACTTTCAGTATAAGCCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAGATTGCCGGAAGATTCAAACCTTGCATTCACATGGGTTGTTTTGATCTTGATGTTTTTGTGGAAATGAATCAACGGTCAAGAAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCATTAGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATTAATTGCGGTGAAGATGTTACAGAGGTTGAGGTGAAGCCTGATGGCTCTTGGCGTGTTAAGGCAAAGAGTGAAAGTGAACGTCTGGATTTAGGGATTCTTGGCCAATGGCATCTTCCTAATGGATCTCTTTGTACTTCTACTGCTGGAGATATCAAGAGAGTAGAAACACTGAAGCAAGTAAAACAGGAAGGTTTTTCAGATGGACCTGCTGGTTTAAAACTTGGCATTAGGAGGAATCGCAATGGGAATTGGGAAGTCAGTAAGCCAGAGACAACCAACACCTCTTCTGGTCATATATTAAAAGAGGTTTTTGGAAATCCTGAACAAGTTGTTATTCCAATGAGCAGCAGTGGCTCCGAAAGTGGTCGGGATGGTGATGATCCCAGTGTTAACCAGGGTGGTGGTGGGCATATTGATTATTCTACTACCAATGGAATTGAGATGGATTCTCAGTCTCGCAATAATGTTGATTTAGCTCGTGGATATACTGTGCATAACACATCTGCTCAGGTGGGTGGGGCAGAGATAATTGTTCTTAGCGACTCTGAAGAAGACAATGACATATTGGTGTCTCCTCCAATTGCAAATAACAACCACCAAAATGATACTGCAGATGGTTACTCCATGCCACCTCCTGGAATTGTTGACCCATACGTTGAAGATCAGAATCTTGGTGGAAGTTCATGCTTGGGGCTTTTTCCTAATGAAGATGATTTTGGAATATCTTCCCTGTGGTCATTGCCTTCTGCATCTCAGGCTGGTCCAGGATTCCAATTGTTTGGTTCTGATGCAGATGCCTCTGATGCATTGGTTCATTTGCAGCATGTCCCTATTAATTGCACCTCATCACTGAACGGTTATGCATTGGCTCCCGAAACTGCTTTGGGATCTGGCAGTCTCTTACAAGATTCCTCTGCTGGACGGTCAGATGCTGACTTAAACGGTGGTTTGGTTGACAACCCATTGGCATTTGCTGGAGATGATCCCTCTCTTCAGATTTTTCTCCCCACAAGACCAGCTGAGTCGTCTATGCAGAATGAATTGAGAGATCAAGCAAATGTCTCTAATGGTGTTTCTACCGAAGATTGGACATCCCTTACTCTCGGAGGTGGTGCTGGCGGTAGTAATGGCGATGCTTCCACTCAAAATGGATTGAATTCTAGACACCAAGTCCCATCCAGAGACAATGGCACAAATACTTTGGCTGATTCTGCTTCTTTGCTTCTTGGTATGAATGATGTAAGATCTGACAGAGCAAGTAGACCAAGGTCAGGTAGTCCTTTCACATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCTTGTACCTTTCTATTGATTCGGAATCGGAATAA 2649 0.4322 MDLVAGIKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSDEQVSKIWAKKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQVVSDSSNVKVKAEVEDSFQIQTTTTTKIRCLCGSTLETGDLIKCDDARCQVWQHISCVIIPEKPMEGIPPVPDKFYCELCRLSRADPFWVSVSHPLLPVKLATTSIPTDGTNPVQCVERTFQLTRADKDMVSKQEFDVEAWCMLLNDKVPFRIQWPQYTDLAVNGLPIRTTTRPGSQLLGANGRDDGPIITPHTKDGINKISLTVCDARIFCLGVRIVRRRSLQQILNLIPKESDGEPFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSISLRCPMSGSRMKIAGRFKPCIHMGCFDLDVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMINCGEDVTEVEVKPDGSWRVKAKSESERLDLGILGQWHLPNGSLCTSTAGDIKRVETLKQVKQEGFSDGPAGLKLGIRRNRNGNWEVSKPETTNTSSGHILKEVFGNPEQVVIPMSSSGSESGRDGDDPSVNQGGGGHIDYSTTNGIEMDSQSRNNVDLARGYTVHNTSAQVGGAEIIVLSDSEEDNDILVSPPIANNNHQNDTADGYSMPPPGIVDPYVEDQNLGGSSCLGLFPNEDDFGISSLWSLPSASQAGPGFQLFGSDADASDALVHLQHVPINCTSSLNGYALAPETALGSGSLLQDSSAGRSDADLNGGLVDNPLAFAGDDPSLQIFLPTRPAESSMQNELRDQANVSNGVSTEDWTSLTLGGGAGGSNGDASTQNGLNSRHQVPSRDNGTNTLADSASLLLGMNDVRSDRASRPRSGSPFTFPRQKRSVRPRLYLSIDSESE* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1764 882 CDD PHD_Bye1p_SIZ1_like 118 169 - -
Mtr4g1764 882 Pfam MIZ/SP-RING zinc finger 363 411 IPR004181 GO:0008270
Mtr4g1764 882 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 813 - -
Mtr4g1764 882 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 813 - -
Mtr4g1764 882 Pfam PHD-finger 118 170 IPR019787 -
Mtr4g1764 882 Pfam SAP domain 14 42 IPR003034 -
Mtr4g1764 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 175 IPR013083 -
Mtr4g1764 882 SUPERFAMILY FYVE/PHD zinc finger 112 173 IPR011011 -
Mtr4g1764 882 MobiDBLite consensus disorder prediction 543 580 - -
Mtr4g1764 882 SMART sap_9 11 45 IPR003034 -
Mtr4g1764 882 MobiDBLite consensus disorder prediction 845 882 - -
Mtr4g1764 882 MobiDBLite consensus disorder prediction 543 558 - -
Mtr4g1764 882 ProSiteProfiles Zinc finger SP-RING-type profile. 350 433 IPR004181 GO:0008270
Mtr4g1764 882 SUPERFAMILY SAP domain 1 64 IPR036361 -
Mtr4g1764 882 SMART PHD_3 118 170 IPR001965 -
Mtr4g1764 882 Gene3D SAP domain 1 62 IPR036361 -
Mtr4g1764 882 ProSitePatterns Zinc finger PHD-type signature. 119 169 IPR019786 -
Mtr4g1764 882 MobiDBLite consensus disorder prediction 773 833 - -
Mtr4g1764 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 451 IPR013083 -
Mtr4g1764 882 ProSiteProfiles Zinc finger PHD-type profile. 116 172 IPR019787 -
Mtr4g1764 882 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1764 Mtr-Chr4 30467444 30477716 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr4g1764 PHD 2.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1764 - - aprc:113857557 1478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1764 4 30467444 30477716 Mtr4g1764 4 30467444 30477716 ECH
Mtr2g3217 2 46075125 46085389 Mtr4g1764 4 30467444 30477716 PCT