Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1756 ATGATGTCTAAACAACCCTTTTCAGTTTCACCTTCCAATTCCAACACCATGAGAGCTTCCTCCTCAAATCAAGTTCAACACTCAAACCCTAATCCAAATCCAGTTCCATCTAAGAAAAAAAGAAACCTACCAGGAACACCAGATCCGGAATCAGAAGTGGTTGCTATGTCACCAAAGTCATTGATGGCGACGAACCGTTTCTTATGTGAAATCTGCAACAAGGGTTTCCAAAGAGACCAGAATTTGCAGCTTCATCGGCGAGGACACAACCTACCATGGAAGCTGAAGCAAAGAGCAAACAAAGATCAAATTCGAAAGAAGGTTTATGTGTGTCCTGAGAAGACTTGTGTGCACCATGAACCTTCTAGAGCTTTGGGAGATTTGACAGGAATAAAGAAACATTATAGTAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGCAAGATTTGTGGAACTAGAGAGTACAAATGTGATTGTGGCACAATTTTCTCCAGGAAGGACAGCTTCATAACACATAGAGCTTTTTGTGATGCATTAACTGAACAAAGTGCAAAGATAACAACGGTTCCGGCAGCTTTAAGCAACTTTCGGAATGATCATTTGACGAATACTCAAACTCCAAGAATTCCTCATATTTTTCCTGGTTTTCAGTTTCACTCGGAATTTGTTAATTCAGCAACATCATCAGAACCACCATTGGGAAATTACACTAACATTTCTCAACTTCATCAAAATTCTGATATAATGCAAACAATGGATGTGTTTGGATCACAACCACAGTGGCTGAATTATAATAATGCTAATCTATCTTTGCCAATGCTACATGGAGTAATGAAACAAGAACAAGAAGAAAACAAAGATTTGTCTGCTAGTGTAATAAGCTCTTTGTACTTGAGTAGAAGTCAGAATCAGAATCAGCAAGAAGCACCAAATCACTTGTCAGTAACAACATCACTGTTGCAGAAAGAATCTCAAATGGGATCTACAAGGACAATAATTACCAATGATAATAACACAGTCTTCAATAATTTGAACCACTTTCACATTGTTCATGAGGTTCAGAAATTTTATAACAAGCAATGTGAAAGTGAAGAGTTGAATGAGTTGGTGAATTTGGAGGGAAGCAATAGTAGCACTAATCTTGGAGGTGGGTATTTATTAAATGATTCAAACAATATGTTTGGGATTGTGAATGGTACAAAGGATTTGGATCATGTGGTATTGTCTGTGGATAAAGAGACAACAAATAGACAAATGTATGATTCAGGTTCAAGGTCAAAAGAAAAAAACCAAATGGGTTTTACAAGAGATTTTCTTGGGGTTGGAGAAGATGACTCAATGAGTAGACCTTTTTTGCAGCAAGAACTTGGTGAGTTTAATGGAATGGGATCATTAGGAAATAATCTTCAGAGCCAGTATGGTAATGGACACTACTGCTAG 1488 0.375 MMSKQPFSVSPSNSNTMRASSSNQVQHSNPNPNPVPSKKKRNLPGTPDPESEVVAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDQIRKKVYVCPEKTCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALTEQSAKITTVPAALSNFRNDHLTNTQTPRIPHIFPGFQFHSEFVNSATSSEPPLGNYTNISQLHQNSDIMQTMDVFGSQPQWLNYNNANLSLPMLHGVMKQEQEENKDLSASVISSLYLSRSQNQNQQEAPNHLSVTTSLLQKESQMGSTRTIITNDNNTVFNNLNHFHIVHEVQKFYNKQCESEELNELVNLEGSNSSTNLGGGYLLNDSNNMFGIVNGTKDLDHVVLSVDKETTNRQMYDSGSRSKEKNQMGFTRDFLGVGEDDSMSRPFLQQELGEFNGMGSLGNNLQSQYGNGHYC* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1756 495 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Mtr4g1756 495 SMART c2h2final6 109 139 IPR013087 -
Mtr4g1756 495 SMART c2h2final6 67 89 IPR013087 -
Mtr4g1756 495 SMART c2h2final6 144 164 IPR013087 -
Mtr4g1756 495 Gene3D Classic Zinc Finger 45 121 - -
Mtr4g1756 495 MobiDBLite consensus disorder prediction 1 36 - -
Mtr4g1756 495 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 463 - -
Mtr4g1756 495 Gene3D Classic Zinc Finger 122 202 - -
Mtr4g1756 495 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 9 463 - -
Mtr4g1756 495 MobiDBLite consensus disorder prediction 1 54 - -
Mtr4g1756 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Mtr4g1756 495 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1756 Mtr-Chr4 30293502 30296232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1756 37 214 IDZ Gene Family AT3G45260 79.213 8.24e-111 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g1756 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1756 K25870 - gmx:100817691 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3224 2 46146630 46149364 Mtr4g1756 4 30293502 30296232 PCT