Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1750 ATGGCTTCTTCCAACAATTCAGTAGCAGAAAACAACAAGAAGAAAACCAAAAAACCACAAACCTCAACTCCTACAAGCAAAATCAAGAAAGACAACAAAAACATTGAAAAATCCAAAGAAAACAACAACAAGAATAAGAAGAAGCTCAATTTCACAAATGGAAATTCCAAAGAACAGGAAGAAAGTGGAAGAAAAAAGAAACATGCAAAGGATGATGACGAAGAAGAAGATGCGAAAACGCATGTGTTTCCTATGAATCGAATTAGGACGATGTTAAAGGGTGAAATTAGCGATTTGCGTGTTTCTCAGGAAGCTATATTGGCTATTAACAATGCTGCGGAGAAGTTTCTTGAACAATTAGCGGAAGATGCTTATGGTTGTTGTGCTCAGGATCGGAAGAAATCTTTGAGCTACAATCATCTATCACGTGTTGTTAGTAAGCAAAAAAGATATGACTTTCTGTCCGACTTTGTTCCTGAGAAAGTGAAAGCTGAGGATGCATTAAGAGAGACAAACTCAAGAGGGAATAAAGGAGGTTAG 540 0.3704 MASSNNSVAENNKKKTKKPQTSTPTSKIKKDNKNIEKSKENNNKNKKKLNFTNGNSKEQEESGRKKKHAKDDDEEEDAKTHVFPMNRIRTMLKGEISDLRVSQEAILAINNAAEKFLEQLAEDAYGCCAQDRKKSLSYNHLSRVVSKQKRYDFLSDFVPEKVKAEDALRETNSRGNKGG* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1750 179 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 9 174 - -
Mtr4g1750 179 SUPERFAMILY Histone-fold 27 154 IPR009072 GO:0046982
Mtr4g1750 179 Gene3D Histone, subunit A 33 160 IPR009072 GO:0046982
Mtr4g1750 179 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 83 145 IPR003958 -
Mtr4g1750 179 Coils Coil 28 48 - -
Mtr4g1750 179 MobiDBLite consensus disorder prediction 29 82 - -
Mtr4g1750 179 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 174 - -
Mtr4g1750 179 MobiDBLite consensus disorder prediction 1 82 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1750 45 144 CCAAT-HAP5 Transcription Factor Family AT1G07980 36.000 2.70e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mtr4g1750 CBFD_NFYB_HMF 3e-12 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1750 - - lja:Lj3g3v3086110.3 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1750 4 30238787 30241988 Mtr4g1750 4 30238787 30241988 ECH