Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1744 ATGAGTTCTGAAGAAAATAAACATGTCACTGAGGATCATGAACATGATGATGATACTTCTTGCAGAAGAACAGTTTCTCTTCCTCCTGTTATTCACAAGGATGATGATGATTCAATGGGAATAACTGAAGAAACATCACATGTTCCTCCCAGGAAGAAACAAAATCTTCTCCTAGAAATACCATCAAGAACACCAGAAGAGTGTTCAGAAGATTTTGTTGCAATCAAAATGCCAATGACACCAAGTCCTACTCCAACTCCTACTCCCAAGAGAGTGAATTTTCTTATGACTTCTCGCTCGGTCGATGCTCCGACAAATAGCTCTCCTGGATCTGCAACATCAAAAGGAAAATCATCCATAAGAAAGATGCTGCCAAAATTGAGTTTCAGGTATAGGACACCGGCAGATATTGAGAAGACGAATACACCAACTCGGGAAGTTTCGTCTTCGGGAACTCGAGAAAAGCCTTTAATATCAAGATCATTGTCGCTTGGTAAAATATTTACTCCTAGGATGAAAAGAACTTCATCATTGCCATTAGGAGAAATTGGACATTCAAACCCTGAATCTACTCATGGTGGAAATGGAAGTGTCGGCGGTCCTCTCAGTAAAAAAGAAACTCGGCTAAAGATAGCGCGTTCTCTTTCAATGCCTGCCAACAACAACAAGGACAAAAGTATAAGGAGGATGGATTCGTTTTTTCGTGTTGTTCCTTCTACTCCTCGAGTAAAGGAAGCAAATGAATTGTTGAGCTCGTCCCCGACAAAGGATACTGAAGTCAAAGATGATGATGGTGAAGATATACCTGAAGAAGAGGCGGTGTGTAGAATCTGTCTGGTTGAATTATGTGAAGGAGGTGAGACCTTCAAGTTGGAATGTAGCTGTAAAGGTGAACTTGCTTTGGCTCACAAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGGAACAAGACATGTGATGTCTGCAGAAAGGAGGTTACAAACCTTCCTGTCACTCTACTACGGATCCAAAGTGTTCGAAATCGGAATGGTGGATTAAGTCGAGCTCAGCTTGAAGATGTAAACGGGGTTTGGCAGGAAGTTCCAGTGCTCGTCATTGTTAGCATGTTGGCCTATTTTTGTTTTCTTGAGCAACTGTTGGTGACGAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTATTAGGTCTGCTCTCCTCCATGACATCTTCAACCATGGTGATGAGCAGGTTCATATGGATTTATGCATCCTTCCAGTTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTTGCAACATTTGCTGGTTTTGGCGTAGTAATGAGTGGAAGTTCTATGCTTGTTGAGTTTTTTAGATGGAGAAGGAGATGGCAGGCTTCATTAGAGCAACAACATGGCCCTCTACCGATGACACAAGCAGGACAGCAACCTCGAACAGTAACCACGCCACGCTCAGGCCAATCCAACCACAATCAATCTGTAGTGCAAAATCAACAAGACTCAAATCAAAACTGA 1566 0.4208 MSSEENKHVTEDHEHDDDTSCRRTVSLPPVIHKDDDDSMGITEETSHVPPRKKQNLLLEIPSRTPEECSEDFVAIKMPMTPSPTPTPTPKRVNFLMTSRSVDAPTNSSPGSATSKGKSSIRKMLPKLSFRYRTPADIEKTNTPTREVSSSGTREKPLISRSLSLGKIFTPRMKRTSSLPLGEIGHSNPESTHGGNGSVGGPLSKKETRLKIARSLSMPANNNKDKSIRRMDSFFRVVPSTPRVKEANELLSSSPTKDTEVKDDDGEDIPEEEAVCRICLVELCEGGETFKLECSCKGELALAHKECAIKWFSIKGNKTCDVCRKEVTNLPVTLLRIQSVRNRNGGLSRAQLEDVNGVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVMSRFIWIYASFQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSMLVEFFRWRRRWQASLEQQHGPLPMTQAGQQPRTVTTPRSGQSNHNQSVVQNQQDSNQN* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1744 521 MobiDBLite consensus disorder prediction 484 521 - -
Mtr4g1744 521 MobiDBLite consensus disorder prediction 99 203 - -
Mtr4g1744 521 Pfam RING-variant domain 275 322 IPR011016 GO:0008270
Mtr4g1744 521 MobiDBLite consensus disorder prediction 245 265 - -
Mtr4g1744 521 SMART ringv_2 274 323 IPR011016 GO:0008270
Mtr4g1744 521 MobiDBLite consensus disorder prediction 1 50 - -
Mtr4g1744 521 MobiDBLite consensus disorder prediction 99 118 - -
Mtr4g1744 521 MobiDBLite consensus disorder prediction 180 197 - -
Mtr4g1744 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 330 IPR013083 -
Mtr4g1744 521 MobiDBLite consensus disorder prediction 1 64 - -
Mtr4g1744 521 CDD RING_CH-C4HC3_MARCH 275 323 - -
Mtr4g1744 521 ProSiteProfiles Zinc finger RING-CH-type profile. 267 329 IPR011016 GO:0008270
Mtr4g1744 521 MobiDBLite consensus disorder prediction 135 157 - -
Mtr4g1744 521 PANTHER OS02G0165000 PROTEIN 21 501 - -
Mtr4g1744 521 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 501 - -
Mtr4g1744 521 SUPERFAMILY RING/U-box 271 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1744 Mtr-Chr4 30138648 30143460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1744 259 329 C3H Transcription Factor Family AT2G37950 45.833 2.23e-14 70.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1744 4 30138648 30143460 Mtr4g1744 4 30138648 30143460 ECH
Mtr2g3234 2 46251060 46254968 Mtr4g1744 4 30138648 30143460 PCT