LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g1733	ATGGCTAAAGATGTTGAGGTTCAAGAACAAGGAGAATACTCAGCAAAAGATTACCAAGACCCACCTCCAGCACCATTGATAGATGTTGAGGAGCTAACAAAGTGGTCATTTTATAGAGCTCTTATAGCTGAGTTTGTTGCAACACTTCTCTTCCTTTATGTCACTGTTTTGACCATTATTGGTTATAGCCACCAGTCTGATCCTAAAGCTGGTGGTACCGACTGTGATGGTGTTGGAATTTTGGGTATTGCTTGGGCTTTTGGTGGCATGATTTTCATTCTTGTTTACTGCACCGCCGGTATCTCTGGAGGACACATCAACCCTGCCGTGACATTCGGGCTATTCGTGGGACGAAAGGTGTCCTTGATTAGGGCTGTATTTTACATGGCAGCACAGAGTGCCGGTGCAATCTGTGGTACCGGACTTGCCAAAGGTTTCCAAAAAGCATACTTTGACAGGTATGGAGGTGGTGCCAACTTTGTACATGATGGCTACAACAAAGGCACAGCTTTAGGTGCTGAAATCATTGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGATCCTAAGAGGAACGCTAGGGACTCCCATGTTCCTGTTTTGGCACCACTTCCCATTGGATTTGCTGTTTTCATGGTTCACTTGGCTACTATCCCCGTTACCGGCACCGGTATTAACCCGGCAAGAAGTTTCGGATCAGCCGTGATCTACAACGACGGCAAAATTTGGGATGATCAGTGGATTTTCTGGGTCGGTCCATTTATTGGAGCTGCAGTGGCTGCAATTTACCACCAATACATTCTAAGAGGATCAGCCATTAAAGCTCTTGGATCCTTCAGGAGTAACGCTTAA	858	0.458	MAKDVEVQEQGEYSAKDYQDPPPAPLIDVEELTKWSFYRALIAEFVATLLFLYVTVLTIIGYSHQSDPKAGGTDCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLIRAVFYMAAQSAGAICGTGLAKGFQKAYFDRYGGGANFVHDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGSAVIYNDGKIWDDQWIFWVGPFIGAAVAAIYHQYILRGSAIKALGSFRSNA*	286

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g1733	285	PANTHER	AQUAPORIN PIP2-7	1	285	-	-
	Mtr4g1733	285	TIGRFAM	MIP: MIP family channel proteins	43	265	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr4g1733	285	Gene3D	Glycerol uptake facilitator protein.	24	285	IPR023271	-
	Mtr4g1733	285	ProSitePatterns	MIP family signature.	105	113	IPR022357	-
	Mtr4g1733	285	CDD	MIP	39	269	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr4g1733	285	Pfam	Major intrinsic protein	31	266	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr4g1733	285	PRINTS	Major intrinsic protein family signature	39	58	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr4g1733	285	PRINTS	Major intrinsic protein family signature	87	111	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr4g1733	285	PRINTS	Major intrinsic protein family signature	124	143	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr4g1733	285	PRINTS	Major intrinsic protein family signature	173	191	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr4g1733	285	PRINTS	Major intrinsic protein family signature	209	231	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr4g1733	285	PRINTS	Major intrinsic protein family signature	249	269	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr4g1733	285	PANTHER	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	1	285	IPR034294	-
	Mtr4g1733	285	SUPERFAMILY	Aquaporin-like	30	270	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g1733	Mtr-Chr4	30018738	30020717	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g1733	1	285	Major Intrinsic Protein MIP	AT2G37170	79.649	5.64e-169	469

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g1733	K09872		-	gmx:100811119	522.702

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr4g1733	4	30018738	30020717	Mtr4g1733	4	30018738	30020717	ECH
	Mtr7g3087	7	47675496	47677103	Mtr4g1733	4	30018738	30020717	ECH
	Mtr2g3240	2	46312846	46315333	Mtr4g1733	4	30018738	30020717	PCT