Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1728 ATGGCTATGGCTATGGCTGTGGCTCATCATAGAGAAAGTAGTAGTAGTGGTGGAAGCATTGATAAGCATCTAGATTCAGGGAAATATGTTAGGTATACTTCTGAACAAGTTGAAGCATTGGAAAGGGTGTATGCTGAGTGTCCTAAGCCTAGTTCCATGAGAAGACAACAATTGATTCGTGAGTGTCCTATTCTTTCCAACATTGAACCCAAACAGATCAAGGTTTGGTTCCAAAATCGAAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCAAGGCTTCAAACTGTGAATAGGAAATTGTCTGCAATGAACAAGTTGTTGATGGAGGAAAATGATAGGTTGCAGAAACAAGTGTCACAGCTTGTGTGTGAGAATGGATTTATGAGGCAACAATTGCATACTCCATCAGCAGCAAATACTGATGCAAGTTGTGACTCAGTAGTTACTACTCCTCAGAATTCTAAGAGAGATGCTACTAACCCTGCTGGACTCCTATCAATTGCAGAGGAGACTTTGACAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCGATTTCACAAAGTTGTAGTGGAGTGGCAGCTCGAGCTTGCGGTCTTGTTAGTTTAGAACCCACAAAGATTGCAGAGATCCTTAAAGATCGTTTATCTTGGTTTCGCGAGTGTCGGAACCTAGAAGTTTTCACAATGTTTCCTGCCGGAAATGGGGGAACCATTGAGCTTATTTACACACAGACATATGCTCCAACGACGCTAGCTCCTGCCCGGGATTTCTGGACTCTTCGATACACTACAACTTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCCCTGTCTGGTTCTGGCACTGGCCCTAATCCAACTGCTGCTGCTCAGTTTGTAAGAGCCGAAATGCTCCCGAGTGGCTACTTGATTCGACCATGTGATGGTGGAGGTTCAATCATCCACATTGTAGACCACTTAAATCTTGAACCGTGGAGTGTGCCAGAAGTACTACGGCCACTTTATGAATCACCAAAGGTGGTGGCTCAAAAAATGACCATTGCAGCACTTCGATATATTAGGCAAATAGCTCAGGAATCGAGTGGTGAAGTGGTATACGGATTAGGTAGACAGCCTGCTGTTTTGCGAACATTCAGCCAAAGATTGAGCAGAGGCTTCAATGACGCTGTAAATGGATTCAGTGATGATGGTTGGTCTATACTGAACTGTGATGGCGCTGAGGATGTAATTATTGCTGTTAATTCAACCAAGAATTTAAGTAGCTCTTCTAATCCAGCAAGTTCCCTCACATTGCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTACTACAAAACGTTCCTCCTGCAGTTTTGGTTCGCTTTCTAAGGGAGCACCGCTCAGAATGGGCTGATTTCAATGTTGATGCATACTCCGCTGCATCACTGAAAGCAGGAACCTATGCTTATCCAGGGATGAGGCCTACAAGATTCACTGGCAATCAAATAATCATGCCTCTTGGGAACACAATTGAACATGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGCCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGATATTCATCTGTTACAGATATGTAGTGGAACTGATGAGAACGCTGTTGGAACTTGTTCTGAGCTCATATTTGCTCCAATTGATGAGATGTTCCCAGATGATGCTCCATTGGTGCCTTCTGGTTTCCGCATCATCCCATTAGATTCAAAACCAGGTGATAAGAAGGATGCCGTGAATACAAACCGGACACTAGATTTGACTTCAGGTCTTGAAGTGAGCCCAGCAACAACTCACGGCGGTGCAGATTCATCATCAAGTCAAAATACCCGATCAGTGTTGACTATTGCCTTTCAGTTCCCTTTCGACAGCACTATGCAAGATAATGTTGTAATCATGGCACGCCAATATGTTCGTAGTGTGATTGCCTCTGTGCAGAGGGTTGCTATGGCTATTTCTCCGTCCGGTATAAACCCAGCTGTTGGTGCCAAACTTTCTCCTGGTTCTCCAGAAGCAGTAACACTAGCTCAATGGATCTGCCAGAGTTATAGTTACTATTTGGGGACGGACTTACTGAGATCAGATTCTCTTGTTGGTGACTTGATGCTAAAACAACTGTGGCATCACCAGGACGCAATTTTATGCTGTTCATTGAAGTCGCAGCCGGTGTTCGTATTTGCAAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTAGCTTTACAAGACATCACATTGGATAAAATATTTGACGAGTCTGGTCGCAAGGCGTTGTGTGCAGATTTTGCCAAGTTAATGCAACAGGGGTTTGCTTATCTGCCAGCTGGGATCTGCATGTCCACAATGGGGCGGCATGTTTCGTACGAGCAAGCTATTGCATGGAAAGTGCTAACACCAGAAGATAACACTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA 2541 0.442 MAMAMAVAHHRESSSSGGSIDKHLDSGKYVRYTSEQVEALERVYAECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVCENGFMRQQLHTPSAANTDASCDSVVTTPQNSKRDATNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRLSWFRECRNLEVFTMFPAGNGGTIELIYTQTYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGTGPNPTAAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVLRPLYESPKVVAQKMTIAALRYIRQIAQESSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFSDDGWSILNCDGAEDVIIAVNSTKNLSSSSNPASSLTLLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGNQIIMPLGNTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGTDENAVGTCSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDAVNTNRTLDLTSGLEVSPATTHGGADSSSSQNTRSVLTIAFQFPFDSTMQDNVVIMARQYVRSVIASVQRVAMAISPSGINPAVGAKLSPGSPEAVTLAQWICQSYSYYLGTDLLRSDSLVGDLMLKQLWHHQDAILCCSLKSQPVFVFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLTPEDNTVHCLAFSFINWSFV* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1728 846 MobiDBLite consensus disorder prediction 134 159 - -
Mtr4g1728 846 SMART HOX_1 25 91 IPR001356 GO:0003677
Mtr4g1728 846 ProSiteProfiles 'Homeobox' domain profile. 23 87 IPR001356 GO:0003677
Mtr4g1728 846 MobiDBLite consensus disorder prediction 617 636 - -
Mtr4g1728 846 Coils Coil 93 124 - -
Mtr4g1728 846 MobiDBLite consensus disorder prediction 1 24 - -
Mtr4g1728 846 CDD homeodomain 28 88 IPR001356 GO:0003677
Mtr4g1728 846 Gene3D - 21 94 - -
Mtr4g1728 846 SUPERFAMILY Homeodomain-like 27 90 IPR009057 -
Mtr4g1728 846 Pfam START domain 167 374 IPR002913 GO:0008289
Mtr4g1728 846 Pfam MEKHLA domain 702 845 IPR013978 -
Mtr4g1728 846 Pfam Homeodomain 28 86 IPR001356 GO:0003677
Mtr4g1728 846 SMART START_1 166 376 IPR002913 GO:0008289
Mtr4g1728 846 Gene3D - 201 383 IPR023393 -
Mtr4g1728 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 3 846 - -
Mtr4g1728 846 SUPERFAMILY Bet v1-like 166 378 - -
Mtr4g1728 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 3 846 IPR044830 GO:0003700
Mtr4g1728 846 CDD bZIP 80 119 - -
Mtr4g1728 846 CDD START_ArGLABRA2_like 161 377 - -
Mtr4g1728 846 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1728 Mtr-Chr4 29964421 29970383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1728 3 846 Homeobox Transcription Factor Family AT5G60690 81.412 0.0 1434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr4g1728 START 8.5e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1728 K09338 - gmx:100804870 1563.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1728 4 29964421 29970383 Mtr4g1728 4 29964421 29970383 ECH