Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1726 ATGAAGGAAAGTGAGAAAGGGTATTTGGATCCACAGCTATGGCATGCCTGTGCTGGTGGAATGGTTCAGATACCTCAAGTGAACTCCAAAGTTTTCTACTTTCCACAAGGACATGCTGAACATGCTAATACAAACATTGATCTAAGGGTTTCAGTTTCACCACTGATTCTTTGTAAGGTTGTTGGTGTTAAATTCATGGCTGACCCTGAAACTGATGAAGTTTTTGCTGTAATGAAGCTTCTTCCTTTGAGGAATTCAGAGCTTGGTTATGATGAAGGTGGTGGTGGTGGTGATGGTTTGGAAAATTCAGAAAAGCCTGCATCTTTTGCTAAGACTTTGACTCAATCTGATGCAAACAATGGTGGGGGGTTTTCTGTTCCAAGGTACTGTGCTGAGACGATCTTTCCGAGGCTTGATTACGCGGCTGAGCCACCTGTTCAGACGGTGGTAGCGAAGGATGTGCACGGTGAGCTTTGGAAGTTTAGGCATATTTATAGAGGGACACCGCGCCGGCACTTGCTTACAACAGGGTGGAGTAGTTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCTGTGGTGTTTTTGAGGGCTGAGAATGGTGAATTGTGTGTTGGAATTCGTAGGGCGAAAAAGGGAATTGGTGGTGGTTTTGATGGTTCATCTTGTGGATGGACTTCAGGTTCTGGTTCTAACAATGTAAATTGTGGAATTGGACCTTTTGGGGCATTTTCTTTTTTCTTGAAAGAAGAGAATAAGACATTGAGAAATGGTTGTTTTGATGGTAATTTGAGTGGAAGAGTGAGAGTGAGGGCTGAAGATGTTATGGAAGCTGTGAAATTGGCTGCTAACAACCAACCATTTGAAGTTGTTTACTATCCAAGAGCTAGCACTCCTGAGTTCTGTGTTAAGGCTTCAGCTGTGAAGGCTGCTATGAGGATTCAATGGTGTTCTGGGATGAGGTTCAAGATGCCCTTTGAAACTGAAGACTCTTCTAGGATTAGTTGGTTTATGGGAACAATCGCTTCTGTTCAGGTTGTTGATCCTATTCGTTGGCCTAACTCTCCTTGGCGCCTTCTTCAGGTTACATGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTCGAATTAGTATCAAATGTACCAGTCATTCATTTCAGCCCTTTCACTCCACCGAGGAAGAAGCTGCGGTTTCCACCAAACCTTGACTTCCCCCTCGATGTTCAATTTCTGTCACCGACGTTTTCAGGCAACCAGCTCGGGCCAAACAGCCCCTTCTTTGGTTTATCTGACAATGCTCCTGCATGTATACAGGGAGCCAGGCATGCTCAATTTGGAGGAATATCTCTTTCAGATCTCAACCTTAACAACAATAAACTTCAGTTAGGGTTGTTTCCTACTAACATTCAGCACCTTGATGTGCATAGTAGGATTTCAAATAGCAACAACATGATGAACAACAATGATAAGACCAAAGAAAGCTTATCATGCCTGTTGAGTATAGGGAAAAAATATGATAAAAGTTTGGAGAAATCTCAATCTGATGACAATGTTGTTAAGAAACATCAGTTTTGTCTTTTTGGTCAACCAATACTCACTGAGCAACAAATTTCTAGAAACTGTTCAGAAAAAAACTCAGTAGATGATAGTAAAGACAAAGAGAAATGGTTTTTGGATGCATTTTCAGCTGGGAAAGGTTCTAATGCTGCTGAGTTTAGTTGGCAACTTGGATTGGATATTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACCCTTGATTTGTCACTTCTTGGTTCTTATGAAGAGCTCTACAATAAACTTGCTAACATGTTTGATTTAGAAAAGTCTGAGATGTTGAATCATGTTTTCTACCGTGATGCAACAGGTGCTGTGAAGCTAATTGGTGAAGAACCCTTCAGTGAATTCATGAAGACAGCAAAAAGATTGACAATTCTGACAGATTCAGGCAGCAAAAATGTCAGAGGGGCATGGATTACAGGAACTCACAAAGGTGAACATGGATTGGATGCATCAAACAAAACAGGACCTCTAAGCATATTTGCATAA 2097 0.4177 MKESEKGYLDPQLWHACAGGMVQIPQVNSKVFYFPQGHAEHANTNIDLRVSVSPLILCKVVGVKFMADPETDEVFAVMKLLPLRNSELGYDEGGGGGDGLENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGGGFDGSSCGWTSGSGSNNVNCGIGPFGAFSFFLKEENKTLRNGCFDGNLSGRVRVRAEDVMEAVKLAANNQPFEVVYYPRASTPEFCVKASAVKAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNVPVIHFSPFTPPRKKLRFPPNLDFPLDVQFLSPTFSGNQLGPNSPFFGLSDNAPACIQGARHAQFGGISLSDLNLNNNKLQLGLFPTNIQHLDVHSRISNSNNMMNNNDKTKESLSCLLSIGKKYDKSLEKSQSDDNVVKKHQFCLFGQPILTEQQISRNCSEKNSVDDSKDKEKWFLDAFSAGKGSNAAEFSWQLGLDIGHCKVFLESEDVGRTLDLSLLGSYEELYNKLANMFDLEKSEMLNHVFYRDATGAVKLIGEEPFSEFMKTAKRLTILTDSGSKNVRGAWITGTHKGEHGLDASNKTGPLSIFA* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1726 698 Pfam B3 DNA binding domain 109 210 IPR003340 GO:0003677
Mtr4g1726 698 ProSiteProfiles B3 DNA-binding domain profile. 109 211 IPR003340 GO:0003677
Mtr4g1726 698 PANTHER AUXIN RESPONSE FACTOR 2 675 - -
Mtr4g1726 698 Gene3D - 316 389 - -
Mtr4g1726 698 Gene3D - 107 211 IPR015300 -
Mtr4g1726 698 SUPERFAMILY DNA-binding pseudobarrel domain 103 210 IPR015300 -
Mtr4g1726 698 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr4g1726 698 CDD B3_DNA 108 209 IPR003340 GO:0003677
Mtr4g1726 698 ProSiteProfiles PB1 domain profile. 586 666 IPR000270 GO:0005515
Mtr4g1726 698 SMART B3_2 109 211 IPR003340 GO:0003677
Mtr4g1726 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 675 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr4g1726 698 Gene3D - 586 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1726 Mtr-Chr4 29941141 29944883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1726 4 670 B3 DNA Binding Superfamily AT4G30080 56.069 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr4g1726 B3 3.3e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1726 - - gmx:100814686 1026.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1726 4 29941141 29944883 Mtr4g1726 4 29941141 29944883 ECH
Mtr7g3089 7 47717148 47720090 Mtr4g1726 4 29941141 29944883 ECH
Mtr1g2199 1 32267348 32271074 Mtr4g1726 4 29941141 29944883 ECH
Mtr2g3249 2 46456594 46460558 Mtr4g1726 4 29941141 29944883 PCT