Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1725 ATGAAGAACAGTTGGTTTTTTGACAAGAATTTTAATGGTGTGTCGGATGAGATTCTTGGTGACGTCGTTGAGTTTTTCGATTTTCCACTTGAAGATGTGGAAACGGATGGTGTGGAACAAGATTGGAATGATCAATTCAAACACCTTGAAGAACCATCTCTTGGTGTTTTTTCAATACCATCATTTGAGCTACACGGCGAAACTCAATATGAGAAACCAAAGCTTGTGAACAATTTCTCTGCTGCTGAACTTTCTCATATTGACAGAAGAAATGTTGTGAATTCAAGCTTAAAAGATCGACGAGGACTACTTGGAAAGACTGCTGGACCGGCATATGGCAAAACTATTCCCATCCAAAATGTCTCCTTCAATGGAACAAATTTACGCGGATGCCGAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGCAGTTATTCCTCGGTGGAGAGTTACAACTTTGAATTACCAGTGATCCCGGCAAAGCGTCCTCGTGGTAAACGCCGGCGCCTCTCAAGCTTCGACAGGCTATTCTCAATTCCATTCATACCTGCTTTTCAAAAGCAGCAATCGGATAAACAGCGTGCTGGTAAATCATTATGCAGAGCCCAAAAAAGGCCAAGGAAAGACGATACCTCCCAGCTCTCTGATAGCATTGAGACGAAGAGATCATCGTTACATGAATCTATTGCTCCTAGAAAATGTACGCATTGCGAGGTAACTGAAACACCACAATGGAGAGAGGGGCCTAAGGGTCCTAAGACCCTATGCAATGCTTGTGGAGTTCGATACAGGTCTGGTCGCCTATTTCCTGAATATCGGCCTGCAGCTAGCCCAACCTTTGAAGCATCAGTGCACTCAAATTCTCACAAGAAGGTCTTGGAAATCAGGAAAAAGGTTAATCAGGAGACTGTTAAAGGTTCTTCTATGTTGTATTTATCATCAAACCTTTCAGGAATTCTCTAG 963 0.4278 MKNSWFFDKNFNGVSDEILGDVVEFFDFPLEDVETDGVEQDWNDQFKHLEEPSLGVFSIPSFELHGETQYEKPKLVNNFSAAELSHIDRRNVVNSSLKDRRGLLGKTAGPAYGKTIPIQNVSFNGTNLRGCRTYSPVSVFESSSYSSVESYNFELPVIPAKRPRGKRRRLSSFDRLFSIPFIPAFQKQQSDKQRAGKSLCRAQKRPRKDDTSQLSDSIETKRSSLHESIAPRKCTHCEVTETPQWREGPKGPKTLCNACGVRYRSGRLFPEYRPAASPTFEASVHSNSHKKVLEIRKKVNQETVKGSSMLYLSSNLSGIL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1725 320 MobiDBLite consensus disorder prediction 202 225 - -
Mtr4g1725 320 Pfam GATA zinc finger 234 267 IPR000679 GO:0006355|GO:0043565
Mtr4g1725 320 PANTHER GATA TRANSCRIPTION FACTOR 22 299 - -
Mtr4g1725 320 ProSiteProfiles GATA-type zinc finger domain profile. 228 264 IPR000679 GO:0006355|GO:0043565
Mtr4g1725 320 MobiDBLite consensus disorder prediction 187 225 - -
Mtr4g1725 320 Gene3D - 226 305 IPR013088 GO:0006355|GO:0008270
Mtr4g1725 320 SMART GATA_3 228 278 IPR000679 GO:0006355|GO:0043565
Mtr4g1725 320 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 22 299 - -
Mtr4g1725 320 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 231 291 - -
Mtr4g1725 320 ProSitePatterns GATA-type zinc finger domain. 234 259 IPR000679 GO:0006355|GO:0043565
Mtr4g1725 320 CDD ZnF_GATA 233 290 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1725 Mtr-Chr4 29924859 29928509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1725 8 302 C2C2-Gata Transcription Factor Family AT1G08010 35.082 8.37e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr4g1725 GATA 4.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1725 - - mtr:MTR_4g058910 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1725 4 29924859 29928509 Mtr4g1725 4 29924859 29928509 ECH
Mtr2g3250 2 46483571 46489486 Mtr4g1725 4 29924859 29928509 PCT