LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g1717	ATGTTATCTATAACTGATACATATGCACCTGAACACAAGTATACCCCTTGGCAGTTCCATTTTAAGGACACTAGTGGTTTGGTAGCTCTGATACATGGTTACTCCAAAATTCATGTCCGACTTGTATGTATCGGTACCGTACGCGTATCATATTGTTTGATAATTGAGAGAGATTGGCACTGCTGGAAAATCGACATGGCTTCAGAAGATTCAAGATTTGTTAGATTTGAAGGTGATCATCTTGAATTAGCTAAACTAACATCACCTAATGGTGACAATGGAATCAAGTTCAACGAAAAACATGTTGCTCCTAGAGTATTATCAAGAGTGTTCTCGGAAGACTACAAGAGAGTGAAAAGAAGAAGAAGAATATTTGATCCTAGGGGACAAACCATTCACCAATGGAACAAGATTTTCTTGGTAGCATGTTTAATTTCTTTGTTTGTGGATCCTCTCTTCTTTTATTTGCCAATAGTTCAAGATGAAGTGTGCATTGATATTGGAATAGCAGTTGAAGTTTTCCTCATAATTATTAGATCAATTGCGGACGTCTTTTACGTCATTCACATTTTCATGAGGTTTCATACGGCATATGTTGCACCTTCTTCTAGGGTTTTTGGGAGAGGAGAACTTGTTATAGACTCTTCTAAGATAGCATCAAGGTACTTGCATAAGGGTTTCTTCTTGGACTTTATTGCTGCCCTGCCCCTTCCTCAGGTGTTAATTTGGATTGTCATACCTAATCTTGGAGGCTCAACCATTGCAAACACAAAAAATGTCCTTAGGTTCATCATCATTATCCAATATTTGCCAAGGCTATTTCTCATTTTTCCACTTTCTTCACAAATTGTAAAAGCTACAGGAGTTGTGACAGAAACAGCATGGGCAGGAGCTGCTTATAACTTGATGCTTTACATGTTGGCCAGTCATGTTTTAGGGGCTTGTTGGTATCTTCTATCAATTGAAAGACAAGAAGCATGCTGGAAGAGTGTTTGCAAACTGGAGGAGTCATCTTGTCAATTTGATTTTTTCGACTGCAACATGGTTAAAGATTCCCTCAGGGTATCATGGTTTGTAACAAGTAATGTCACAAATTTATGCTCACCAAATTCTCTCTTTTATCAGTTTGGTATATATGGTGATGCAGTGACATCCAAAGTTACAACCTCTGCATTCTTTAATAAGTACTTCTTTTGTCTCTGGTGGGGCCTAAGGAATCTGAGTTCTTTGGGACAAGGTCTTCTTACTAGCACTTTTGTTGGAGAAATAATGTTTGCCATTGTTATTGCAACCCTTGGATTGGTTCTTTTTGCATTGCTCATTGGTAATATGCAGACATACCTACAATCGACAACTGTCCGGTTAGAAGAGTGGAGAGTCAAAAGAACTGACACAGAACAATGGATGCATCACAGACAACTACCTCAAGAACTAAGACAATCCGTGCGTAAGTACGATCAATATAAATGGATAGCTACACGAGGCGTAGATGAAGAATCTCTTCTCAGAGGACTTCCATTGGATCTTCGAAGAGACATTAAACGCCACCTTTGTCTTGAACTAGTTCGAAGAGTTCCACTGTTTGATGCAATGGATGAGAGGATGCTAGACGCAATATGCGAAAGACTAAAGCCTGCACTATGCACCGAGAATACTTATCTAGTTCGTGAAGGCGATCCTGTGAACGAGATGCTATTCATAATAAGAGGAAATCTTGATTCCTACACAACGGATGGAGGCCGCACTGGTTTCTTCAACTCATGTCGTATTGGCCCAGGTGATTTTTGTGGCGAGGAGCTTTTGACATGGGCGTTGGATCCACGACCGACTATGGTAATTCCTTCTTCGACTCGAACGGTTAAAGCCATATCTGAAGTAGAAGCCTTTGCACTTATAGCAGAAGACTTGAAGTTTGTTGCATCTCAGTTTAGAAGGTTGCATAGCAAGCAATTGAGGAACAAGTTAAGGTTTCACTCGCACCAATGGAGAACGTGGGCTGCTTGTTTTATACAAGTTGCATGGAGAGTACGATACAAGAAAAGAAAGGTAGTTGTTGAAATGGCAGTCGATGTTGAGTGTGACTCATATTCACTCAAGTGTATGCAATTTAAGAGTAAACTTGTAAATTAA	2130	0.3967	MLSITDTYAPEHKYTPWQFHFKDTSGLVALIHGYSKIHVRLVCIGTVRVSYCLIIERDWHCWKIDMASEDSRFVRFEGDHLELAKLTSPNGDNGIKFNEKHVAPRVLSRVFSEDYKRVKRRRRIFDPRGQTIHQWNKIFLVACLISLFVDPLFFYLPIVQDEVCIDIGIAVEVFLIIIRSIADVFYVIHIFMRFHTAYVAPSSRVFGRGELVIDSSKIASRYLHKGFFLDFIAALPLPQVLIWIVIPNLGGSTIANTKNVLRFIIIIQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWKSVCKLEESSCQFDFFDCNMVKDSLRVSWFVTSNVTNLCSPNSLFYQFGIYGDAVTSKVTTSAFFNKYFFCLWWGLRNLSSLGQGLLTSTFVGEIMFAIVIATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPQELRQSVRKYDQYKWIATRGVDEESLLRGLPLDLRRDIKRHLCLELVRRVPLFDAMDERMLDAICERLKPALCTENTYLVREGDPVNEMLFIIRGNLDSYTTDGGRTGFFNSCRIGPGDFCGEELLTWALDPRPTMVIPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRNKLRFHSHQWRTWAACFIQVAWRVRYKKRKVVVEMAVDVECDSYSLKCMQFKSKLVN*	710

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g1717	709	ProSiteProfiles	cAMP/cGMP binding motif profile.	527	624	IPR000595	-
	Mtr4g1717	709	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	87	693	-	-
	Mtr4g1717	709	PANTHER	-	87	693	-	-
	Mtr4g1717	709	PRINTS	EAG/ELK/ERG potassium channel family signature	190	199	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Mtr4g1717	709	PRINTS	EAG/ELK/ERG potassium channel family signature	307	317	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Mtr4g1717	709	PRINTS	EAG/ELK/ERG potassium channel family signature	396	413	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Mtr4g1717	709	PRINTS	EAG/ELK/ERG potassium channel family signature	422	433	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Mtr4g1717	709	PRINTS	EAG/ELK/ERG potassium channel family signature	440	449	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Mtr4g1717	709	PRINTS	EAG/ELK/ERG potassium channel family signature	490	497	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Mtr4g1717	709	Pfam	Cyclic nucleotide-binding domain	550	636	IPR000595	-
	Mtr4g1717	709	Pfam	Ion transport protein	135	454	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Mtr4g1717	709	CDD	CAP_ED	527	658	IPR000595	-
	Mtr4g1717	709	SMART	cnmp_10	527	658	IPR000595	-
	Mtr4g1717	709	SUPERFAMILY	Voltage-gated potassium channels	126	449	-	-
	Mtr4g1717	709	SUPERFAMILY	cAMP-binding domain-like	457	655	IPR018490	-
	Mtr4g1717	709	Gene3D	-	136	451	-	-
	Mtr4g1717	709	Gene3D	Jelly Rolls	525	645	IPR014710	-
	Mtr4g1717	709	Gene3D	Helix hairpin bin	454	518	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g1717	Mtr-Chr4	29844841	29848192	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g1717	100	692	Ion Channels	AT2G28260	76.560	0.0	968

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr4g1717	4	29844841	29848192	Mtr4g1717	4	29844841	29848192	ECH
	Mtr2g3259	2	46615833	46620262	Mtr4g1717	4	29844841	29848192	PCT