Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr4g1712 | ATGTCACAGCAGAATTCTCATGAGGAGACTGGGAGTGAGAATAGGATAGACAACAGCCAGGAGAAATCCAAAGATAAACTAGTTGAATTGGATCAAGGGAATTCATCTGACAACCAAAAAAAAAAAGATGAAGAACAAGAATATGTGAGGGTGACTATGTCTGAAATACGCAAGAATGTTGAGTGTCCTATCTGCCTTGGCATCATTCGAAAAACAAGAACTTCAATGGAATGCATGCATCGCTTTTGCAAAGTGTGCATAGACAAGTGCATGCGTAGGGGCACCAATGAATGCCCTACATGTCGTACACATTTTCCTAGCCGACGTGCACTGAGAGATGATCCAAACTATGATGCTTTGATTGCAGCTATTTACCCAAATATCGACAAGGTTGAGAAAGAGGAAGAAGCTTTGCTCGAAGAAGAGTTTTCTCAACTTAAGAAGGTTCCTAGAAAGTTTTAA | 462 | 0.4048 | MSQQNSHEETGSENRIDNSQEKSKDKLVELDQGNSSDNQKKKDEEQEYVRVTMSEIRKNVECPICLGIIRKTRTSMECMHRFCKVCIDKCMRRGTNECPTCRTHFPSRRALRDDPNYDALIAAIYPNIDKVEKEEEALLEEEFSQLKKVPRKF* | 154 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr4g1712 | 153 | ProSitePatterns | Zinc finger RING-type signature. | 78 | 87 | IPR017907 | - | |
Mtr4g1712 | 153 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Mtr4g1712 | 153 | CDD | RING-HC_RING1_like | 62 | 102 | - | - | |
Mtr4g1712 | 153 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED | 4 | 149 | - | - | |
Mtr4g1712 | 153 | SUPERFAMILY | RING/U-box | 45 | 134 | - | - | |
Mtr4g1712 | 153 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 147 | IPR013083 | - | |
Mtr4g1712 | 153 | ProSiteProfiles | Zinc finger RING-type profile. | 62 | 102 | IPR001841 | - | |
Mtr4g1712 | 153 | Pfam | Zinc finger, C3HC4 type (RING finger) | 61 | 101 | - | - | |
Mtr4g1712 | 153 | SMART | ring_2 | 62 | 101 | IPR001841 | - | |
Mtr4g1712 | 153 | MobiDBLite | consensus disorder prediction | 10 | 46 | - | - | |
Mtr4g1712 | 153 | PANTHER | OS11G0578200 PROTEIN | 4 | 149 | IPR044592 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr4g1712 | Mtr-Chr4 | 29781210 | 29786583 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr4g1712 | 50 | 125 | C3H Transcription Factor Family | AT3G23060 | 33.750 | 9.81e-08 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr4g1712 | K10695 | - | rcu:8269151 | 161.77 |