Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1712 ATGTCACAGCAGAATTCTCATGAGGAGACTGGGAGTGAGAATAGGATAGACAACAGCCAGGAGAAATCCAAAGATAAACTAGTTGAATTGGATCAAGGGAATTCATCTGACAACCAAAAAAAAAAAGATGAAGAACAAGAATATGTGAGGGTGACTATGTCTGAAATACGCAAGAATGTTGAGTGTCCTATCTGCCTTGGCATCATTCGAAAAACAAGAACTTCAATGGAATGCATGCATCGCTTTTGCAAAGTGTGCATAGACAAGTGCATGCGTAGGGGCACCAATGAATGCCCTACATGTCGTACACATTTTCCTAGCCGACGTGCACTGAGAGATGATCCAAACTATGATGCTTTGATTGCAGCTATTTACCCAAATATCGACAAGGTTGAGAAAGAGGAAGAAGCTTTGCTCGAAGAAGAGTTTTCTCAACTTAAGAAGGTTCCTAGAAAGTTTTAA 462 0.4048 MSQQNSHEETGSENRIDNSQEKSKDKLVELDQGNSSDNQKKKDEEQEYVRVTMSEIRKNVECPICLGIIRKTRTSMECMHRFCKVCIDKCMRRGTNECPTCRTHFPSRRALRDDPNYDALIAAIYPNIDKVEKEEEALLEEEFSQLKKVPRKF* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1712 153 ProSitePatterns Zinc finger RING-type signature. 78 87 IPR017907 -
Mtr4g1712 153 MobiDBLite consensus disorder prediction 1 46 - -
Mtr4g1712 153 CDD RING-HC_RING1_like 62 102 - -
Mtr4g1712 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 4 149 - -
Mtr4g1712 153 SUPERFAMILY RING/U-box 45 134 - -
Mtr4g1712 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 147 IPR013083 -
Mtr4g1712 153 ProSiteProfiles Zinc finger RING-type profile. 62 102 IPR001841 -
Mtr4g1712 153 Pfam Zinc finger, C3HC4 type (RING finger) 61 101 - -
Mtr4g1712 153 SMART ring_2 62 101 IPR001841 -
Mtr4g1712 153 MobiDBLite consensus disorder prediction 10 46 - -
Mtr4g1712 153 PANTHER OS11G0578200 PROTEIN 4 149 IPR044592 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1712 Mtr-Chr4 29781210 29786583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1712 50 125 C3H Transcription Factor Family AT3G23060 33.750 9.81e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1712 K10695 - rcu:8269151 161.77