Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1706 ATGAGGCCAGATCAATTGCATGTTGCACAACAAATTAGGAGAGATAAATTGAGGATCCAGAATCAAGAGTTTCCTAACAACAACATTGAACAATTGTTATCATTACACCAAACTTCACAACCTGCAGGTTTCAATAACTTGGATCTTCTTCATCTCAGAAATGCCAACAACAACATGCTTGATGATCATGATCAAGAAGGTCTTTATTCATCTAATCAAATGATAAATAGTTTTTCAACACCATCAAATCCTTTACACAGAAACCCTTTGGAATATTATTATGAAAATCATGAAATCAATCCTAACTCTTTCTTGCCTACTTCTGAGATTCACAATAATGATATTTTCAAGTCTTCAACTTCCATTAGTTCACATAGCACTTCAGAAATGGCTTCTTTAATGAATCATCATGGCATTTGGGGAGGTGGGAATAGTAATAGCCCTACTGTACCTGTATGTCATGAAAATGAAGCAAATTTGTGGACAAATAGAGGTGTAACTGTTGTTGACAACAGCAACATGGGTTCTTTCTTTAGTGATTGTAACCCTCAAGGTTTATCCTTGTCACTTTCATCAAATTCACAATCCAAACCCTCAGCTTCATCTTCCAATTTTGAACAAGGTTCTTTAAATGTTGTGAAACCAACAACATTAATTTCTAGAGACAGTACTTGTAGTAGTAGTGGTTTTAGGAATGTTGGTCCACTTGGACCATTTACTGGGTATGCAACAATTTTAAAGAATTCAAGGTATTTAAAACCTTGTCAAGAATTATTAGAGGAATGTTGTTGCTTTGTCAAATCCTTTGAAAATAATAACAATAATGTTCCTAAATGGGTTTCTAGAGATGTTGTTGGTTGTTCTAGTTCTGGTGGTGTTGATGAAAAAGGTAGTAGTAATTCAGGTGGTTCATCTTCAATGTTGTATGGTTCAAAAGAGAAAGAGAATAGTGGTGATGGAGGAATTGGGAATAACTTTTGTCTTTCTTCTTCTGCTTCTTCTTCTCGACCAGAGTGCCAAAAGAATAAGGCTCAATTACTGTACATGCACGATGAGGTTACAAGAAGGTACAAGCAATACCATCAACAAATGCAAATGGTGGTTTCATCATTTGAGTCAGTAGCTGGTCTAAGTTCAGCTACACCATACATTTCATTGGCTCTAAAGTCACTATCAAGACACTTCAGATGCCTTAAAAATGCTATCACAGATCAACTCAAACTTACATGTCAAGTATTAGGAGAGGACTTTTCAATACTACCAACAACCACAAGTAGCAGTAATAAATTTGACAGTAATAATAATAATATGACAAGGCTAAGGTGTATGAATCATCATCATAGCTTACAAAAGAACAAATCTGGAGGGAATAGTAATGTAGACTTTGTTGAACCTCAACAACAGCATGTTTGGAGGCCCCAGAGAGGGTTACCTGAAAGATCAGTGGCAATTCTTAAAGCTTGGTTATTTGAGCATTTTCTTCATCCGTACCCTACGGACACTGATAAACACATGTTAGCTACTCAAACAGGTCTATCAAGAAACCAGGTATCGAATTGGTTCATAAATGCTCGAGTCCGTGTGTGGAAACCAATGGTTGAAGAAATACACATGCTTGAATCAAAAGGCACAGCAGAAGCTCAGAATCAGAACAATGATAAAAATGAGGCATGCAGAGTCGGAACGCATGAAAAGCAATTTCAGTGTTTGGAAATGGGGTCATCTTCAGGCATTAACAATGTTGAAAAGGTTATTACAAATGAAGAGCAATGGATTAATAATCTTCAAGAGAAGAGTTCTAAATTGGAAAGTGATCAGATTACACCAAATATCGATTCAACAGTTATGGGTTTTATGCCGTATCAACGTGGATCCGTGTCGCTGACTTTGGGTCTAAGACACGGCGTTGAAAGTGTACAACAGCAGCAACAACAGTTGCAGCAGGATGTAGAGCTTAGACATCAATTTGGAGAGCACATGATCCATGATTTTGTGGGTTAA 2001 0.3683 MRPDQLHVAQQIRRDKLRIQNQEFPNNNIEQLLSLHQTSQPAGFNNLDLLHLRNANNNMLDDHDQEGLYSSNQMINSFSTPSNPLHRNPLEYYYENHEINPNSFLPTSEIHNNDIFKSSTSISSHSTSEMASLMNHHGIWGGGNSNSPTVPVCHENEANLWTNRGVTVVDNSNMGSFFSDCNPQGLSLSLSSNSQSKPSASSSNFEQGSLNVVKPTTLISRDSTCSSSGFRNVGPLGPFTGYATILKNSRYLKPCQELLEECCCFVKSFENNNNNVPKWVSRDVVGCSSSGGVDEKGSSNSGGSSSMLYGSKEKENSGDGGIGNNFCLSSSASSSRPECQKNKAQLLYMHDEVTRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKSLSRHFRCLKNAITDQLKLTCQVLGEDFSILPTTTSSSNKFDSNNNNMTRLRCMNHHHSLQKNKSGGNSNVDFVEPQQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLESKGTAEAQNQNNDKNEACRVGTHEKQFQCLEMGSSSGINNVEKVITNEEQWINNLQEKSSKLESDQITPNIDSTVMGFMPYQRGSVSLTLGLRHGVESVQQQQQQLQQDVELRHQFGEHMIHDFVG* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1706 666 ProSiteProfiles 'Homeobox' domain profile. 468 531 IPR001356 GO:0003677
Mtr4g1706 666 MobiDBLite consensus disorder prediction 292 312 - -
Mtr4g1706 666 MobiDBLite consensus disorder prediction 289 317 - -
Mtr4g1706 666 Pfam Homeobox KN domain 488 527 IPR008422 GO:0003677|GO:0006355
Mtr4g1706 666 Gene3D - 474 536 - -
Mtr4g1706 666 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 33 636 - -
Mtr4g1706 666 SUPERFAMILY Homeodomain-like 473 537 IPR009057 -
Mtr4g1706 666 Pfam Associated with HOX 245 403 IPR006563 -
Mtr4g1706 666 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 33 636 - -
Mtr4g1706 666 Coils Coil 578 598 - -
Mtr4g1706 666 SMART prehox3 240 404 IPR006563 -
Mtr4g1706 666 CDD homeodomain 471 532 IPR001356 GO:0003677
Mtr4g1706 666 SMART HOX_1 471 535 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1706 Mtr-Chr4 29685643 29695094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1706 183 541 Homeobox Transcription Factor Family AT5G02030 42.593 6.11e-73 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Mtr4g1706 POX 6.6e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1706 - - cam:101502049 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1706 4 29685643 29695094 Mtr4g1706 4 29685643 29695094 ECH