Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1677 ATGGGAAGAGCTCCATGTTGTGACAAAACAAGTGTTAAGAGAGGTCCATGGTCACCAGAAGAAGATTCAAAGCTTAAAGATTACATAGAGAAACATGGCACTGGTGGAAATTGGATTTCTCTTCCTCATAAAGCTGGTCTCAAGAGATGTGGAAAAAGTTGTAGATTGAGATGGCTAAACTATCTTAGGCCAAACATTAAGCATGGTGATTTTTCAGATGAGGAAGACAGAATAATTTGCAGTCTCTATGTTAATATTGGAAGCAGGTGGTCAATTATAGCAGCTCAATTACCAGGTAGGACAGACAATGATATCAAGAACTATTGGAACACAAAGTTGAAGAAAAAACTCATGGCTATGCAGTTTCCTACATTACATCATCAAAGAAAACCTTCATTTCCACCTTCTCCTTCTTCTCATCAATTCTTAGACTACTTTACACACACACCAACATCCCTCATAGATCTTCAAACCATTTCACTTCCTTCAAATAATTATCCAAACACAAGTTTCAACCCCTTTTACCAAAACCAAGAGTCCATGATTAGTGTTGTTAATCCTCCCATGCAATATAATTACCCTATTAAAGATAACATGTTTATGTTTGGAAGTGAAGGAAGTAGTTCTTCTGATGGAAGTTGCACTCTTAGTCATGGCAAAGAAATCAAGCAAGAAGAAATTGTTTATCATCATAACATGAATAGTGGTGGATTTGATGGCTACAATAATAATAATAATTTTATGATAAATGGTAACATTGGAAGTTTTGTTGGTGAAAGTGTTAACCAACATGAAGAAAAATCAAGTGGAGTTGGATATAGTTATAATAATGGTCAAAGTCAAACATTAAATCCATTACTAGATTATGGTCTTGAAGATATTAAGCAATTGATTAGTAGCAGCGGTAACAAAGGTTTTCATGTTGATGATATTCATAAGAATGAAGAGATTGGTATGTACTACTTTGATTATTAA 975 0.3426 MGRAPCCDKTSVKRGPWSPEEDSKLKDYIEKHGTGGNWISLPHKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMQFPTLHHQRKPSFPPSPSSHQFLDYFTHTPTSLIDLQTISLPSNNYPNTSFNPFYQNQESMISVVNPPMQYNYPIKDNMFMFGSEGSSSSDGSCTLSHGKEIKQEEIVYHHNMNSGGFDGYNNNNNFMINGNIGSFVGESVNQHEEKSSGVGYSYNNGQSQTLNPLLDYGLEDIKQLISSSGNKGFHVDDIHKNEEIGMYYFDY* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1677 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Mtr4g1677 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mtr4g1677 324 CDD SANT 16 62 IPR001005 -
Mtr4g1677 324 PANTHER TRANSCRIPTION FACTOR RAX3 1 304 - -
Mtr4g1677 324 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr4g1677 324 Gene3D - 69 132 - -
Mtr4g1677 324 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mtr4g1677 324 SMART sant 13 64 IPR001005 -
Mtr4g1677 324 SMART sant 67 115 IPR001005 -
Mtr4g1677 324 PANTHER OS09G0431300 PROTEIN 1 304 - -
Mtr4g1677 324 MobiDBLite consensus disorder prediction 1 21 - -
Mtr4g1677 324 Gene3D - 7 68 - -
Mtr4g1677 324 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mtr4g1677 324 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mtr4g1677 324 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1677 Mtr-Chr4 29267689 29269746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1677 1 121 MYB Transcription Factor Family AT5G57620 85.950 3.24e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g1677 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1677 K09422 - gmx:100779919 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1677 4 29267689 29269746 Mtr4g1677 4 29267689 29269746 ECH
Mtr2g3283 2 46924332 46925976 Mtr4g1677 4 29267689 29269746 PCT