Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1666 ATGGTCTCTCAACCAACCTCCTCGAAAAAGCCTAAGGGTAGACCCATTGGCTCAAAGAACAAGGCCAAAGCACCCATCATTGTTAAGGAAAACACTGACAACCTCATGGAATTGATTGTCATTGAGATCCCTAAGGGCAATGATGTTGTGGAGACTCTCATCAATTTGTCTCTGTATCGTCAAGCTGGAATCACAGTGTTAAGTGCTTCTGGTCTTGTTTCGAATGTCACATTTTTGCACCCGATATTACGTACACCTAATTTTCCAACTAAAGGAACATACAAAATGACATCCTTATTTGGAACTTACATGAATGCGACATATGGTCGTGTTCCTCCCCAATTAATAGCTGAGCCAGCATGTTCCTCCTTTTCTATTTATGTGAAGGCCAATTATGGCAATTACGTGTTTGGTGGAATCGTTGGGGGTAAGGTCAAGGCTGCCGGTGCTGTTTTCATTACAGCCACTCTTTTGAAAAATCCAGAGTTTCATAGGGTGGCTGTCATCAATGGAATTTATCAGGAAATTGAAGATGAGAACACAAGATGTGTTGGTGGTGTCACCCCAATTGCTGAAGATTTTGCGCCAAATTTTGGTGTCATGGGTGTTGATTCGGCTCACCTGAATCAGCAAATGCTTCCTCTTCCAACTGATGTGAATGGCATGCATTGGGATATCTCCCCTAGCACTTGA 693 0.4286 MVSQPTSSKKPKGRPIGSKNKAKAPIIVKENTDNLMELIVIEIPKGNDVVETLINLSLYRQAGITVLSASGLVSNVTFLHPILRTPNFPTKGTYKMTSLFGTYMNATYGRVPPQLIAEPACSSFSIYVKANYGNYVFGGIVGGKVKAAGAVFITATLLKNPEFHRVAVINGIYQEIEDENTRCVGGVTPIAEDFAPNFGVMGVDSAHLNQQMLPLPTDVNGMHWDISPST* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1666 230 Gene3D - 36 182 - -
Mtr4g1666 230 SUPERFAMILY AF0104/ALDC/Ptd012-like 35 166 - -
Mtr4g1666 230 Pfam Plants and Prokaryotes Conserved (PCC) domain 39 158 IPR005175 -
Mtr4g1666 230 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 6 212 - -
Mtr4g1666 230 ProSiteProfiles PPC domain profile profile. 33 179 IPR005175 -
Mtr4g1666 230 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 212 IPR014476 GO:0003680
Mtr4g1666 230 MobiDBLite consensus disorder prediction 1 23 - -
Mtr4g1666 230 CDD DUF296 39 157 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1666 Mtr-Chr4 29131490 29132182 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1666 9 166 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.185 7.36e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1666 - - mtr:MTR_4g057525 338.191