Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1663 ATGTTGGCATTGCATTTCAAATCGTGTTTCTCTCTTCCGTTCACTACTCGCATTTCCGTCAAATCTTCTTCTTCACTCTTCCCTTTCATTCTCTCACTCCCTCTCTCCTCCATTCCTCGCCGTGCAATGTCGTCAAAACCACCACCCTCCGCCTTCGACAAACTCATGTCCGGCGCACGCGCCGCCGCCAAGAAAAAACCCTCTCCACCTTCCTCATCTCCTAAGAAACGAAAATCCCCTACTCCTCCATCGCCACTCAAAACCCCAGATACCGTTCAAAACCCTAATAACAACCTCAAAACCCTAGAAACCGTTCAAAAACCCGAAGAAACTGTTCATGAAGAACCGCCGAGCAAGATCCGAAACACATCATCATCTTCGAAGGGAATAGTCGCTGAATTGAAGGAAAAGGTTCCGCAGCTGAAGAAGAAACCGGCGAGTTTCGATCCGAGTTCGGTTGTTTGCTGGGAGAAAGACAAACCTGTTCCGTTTTTGTTTCTCTGTTTGGCGTTTGATATGATTAACGAAGAGAGTGGGAGGATTGTGATCACTGACATTGTGTGTAATTTGTTGAGAACTGTGATACATGCTACACCGGAAGATCTTGTGCCTGTTGTTTATTTATCAGCGAATAGAATTGCGCCGGCGCATGAAGGGTTGGAATTGGGAATTGGTGATGCTTCGATTATTAAGGCGCTTGCCGAGGCGTGTGGAAGGACTGAGCAACAGATTAAGATTCAGTATAAGGAAAAAGGTGACTTAGGTTTAGTTGCAAAAGCTAGCCGTTCTTCCCAGTCTATGATGCGGAAGCCTGATGCTTTGACTATTAGGAAGGTTTTCAAAACATTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAACCACATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTCTATATAATCCGTTTGCTACAGACAAAATTGCGAATTGGATATGCTGAGCAAACTCTCTTAACTGCCTTAGGCCAAGCTGCTGTGTACACTGAAGAACATTCTAAACCACCTCCTGAAATTCAGTCTCCTTTTGAAGAGGCTGCTAAAATTGTTAAAAAAGTATATTCTGTTCTTCCTGATTATGACAAGATTGTGTCTGCACTCCTTAAGGATGGTGTATGGGAACTTCCAAAGAAGTGTGATTTTACTCCTGGTGTTCCAGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAGTTTCAGGATGTAGAGTTTACGTGTGAATACAAATACGATGGAGAGCGTGCTCAGATACATTTCTTGGAGAATGGCTCGGTAGAGATTTACAGTAGAAATGCTGAACGGAACACTGGGAAGTTTCCTGATGTTGTTACTGCAGTTTCAAGGTTAAAGAAAACATCTGTAACATCATTTATCCTTGATTGTGAACTTGTTGCATATGATCGTACAAAACAGAGAATCCTTCCTTTCCAGGTGCTTAGTACCCGTGCCCGCAAAAATGTAGCTTTGAGTGACATAAAGGTTGATGTTTGTGTCTTTGCTTTTGATTTGTTGTACCTTAATGGCCAAGCACTTCTTCAGGAAAACTTGAAAATCCGTAGAGAGCATCTCTATACCTCTTTCGACGAAGAATCTGGATTCTTTCAGTTTGCAACATCAACAACATCAAATGATGTTGAGGAGATTCAGAAATTTCTTGACAAAGCCATTGATGCAAGCTGTGAGGGATTAATTATTAAAACATTACATGAAGACGCCACATATGAACCCTCCAAGCGGTCACTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCACTAGATTTGGTACCTATTGGTGCTTTCCATGGTCGTGGGAAACGTACAGGAGTGTATGGTGCTTTTCTCCTTGCTTGCTATGACAACGATAATGAGGAGTTTCAAAGCATTTGTAAGATAGGAACTGGATTCAAAGAAGAAGTGCTTGAAGAACGTTCTACTAGCCTTCGCTCTAAAGTGATTCCCAAACCAAAGGCATACTATAAATGTGGAGAATCAATCAATCCTGATGTATGGTTTGACGCAAGTGAGGTGTGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCCGTTTACCGAGCTGCAGTGGGCATAGTAGATTCCAATAAGGGCATATCTCTTAGATTTCCGCGTCTAGTTCGAGTACGGCCTGACAAAGCACCCGAGCAGGCCTCCTCGTCTGAGCAGGTTGCTGAAATGTATAATGCTCAAAAACACAATCACAATGACAAACAGGATGACAATGAAGACGATTGA 2334 0.4272 MLALHFKSCFSLPFTTRISVKSSSSLFPFILSLPLSSIPRRAMSSKPPPSAFDKLMSGARAAAKKKPSPPSSSPKKRKSPTPPSPLKTPDTVQNPNNNLKTLETVQKPEETVHEEPPSKIRNTSSSSKGIVAELKEKVPQLKKKPASFDPSSVVCWEKDKPVPFLFLCLAFDMINEESGRIVITDIVCNLLRTVIHATPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTEQQIKIQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFKTFHLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLTALGQAAVYTEEHSKPPPEIQSPFEEAAKIVKKVYSVLPDYDKIVSALLKDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHFLENGSVEIYSRNAERNTGKFPDVVTAVSRLKKTSVTSFILDCELVAYDRTKQRILPFQVLSTRARKNVALSDIKVDVCVFAFDLLYLNGQALLQENLKIRREHLYTSFDEESGFFQFATSTTSNDVEEIQKFLDKAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFKEEVLEERSTSLRSKVIPKPKAYYKCGESINPDVWFDASEVWEVKAADLTISPVYRAAVGIVDSNKGISLRFPRLVRVRPDKAPEQASSSEQVAEMYNAQKHNHNDKQDDNEDD* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1663 777 Pfam ATP dependent DNA ligase domain 405 609 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mtr4g1663 777 ProSiteProfiles ATP-dependent DNA ligase family profile. 511 647 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mtr4g1663 777 Pfam DNA ligase N terminus 163 338 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mtr4g1663 777 MobiDBLite consensus disorder prediction 90 105 - -
Mtr4g1663 777 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 429 437 IPR016059 GO:0003909
Mtr4g1663 777 MobiDBLite consensus disorder prediction 39 128 - -
Mtr4g1663 777 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 397 615 - -
Mtr4g1663 777 Gene3D - 415 613 - -
Mtr4g1663 777 MobiDBLite consensus disorder prediction 748 762 - -
Mtr4g1663 777 MobiDBLite consensus disorder prediction 743 777 - -
Mtr4g1663 777 CDD OBF_DNA_ligase_I 617 762 - -
Mtr4g1663 777 MobiDBLite consensus disorder prediction 763 777 - -
Mtr4g1663 777 ProSitePatterns ATP-dependent DNA ligase signature 2. 583 609 IPR016059 GO:0003909
Mtr4g1663 777 CDD Adenylation_DNA_ligase_I_Euk 394 612 - -
Mtr4g1663 777 MobiDBLite consensus disorder prediction 73 89 - -
Mtr4g1663 777 Pfam ATP dependent DNA ligase C terminal region 634 745 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mtr4g1663 777 Gene3D - 140 407 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mtr4g1663 777 SUPERFAMILY Nucleic acid-binding proteins 617 763 IPR012340 -
Mtr4g1663 777 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 221 760 IPR000977 GO:0003910|GO:0005524|GO:0071897
Mtr4g1663 777 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 68 777 - -
Mtr4g1663 777 Gene3D - 614 776 IPR012340 -
Mtr4g1663 777 Gene3D DNA ligase/mRNA capping enzyme 434 559 - -
Mtr4g1663 777 PANTHER DNA LIGASE 1 68 777 - -
Mtr4g1663 777 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 145 395 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1663 Mtr-Chr4 29093370 29101218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1663 1 777 Core DNA Replication Machinery Family AT1G08130 65.629 0.0 1035
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1663 K10747 - gmx:100783155 1157.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1663 4 29093370 29101218 Mtr4g1663 4 29093370 29101218 ECH