Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1662 ATGCTGTTCAAACCGTTTTTTCCTCTCTTCAGTCAACATTTCGCATTTCCCTCGAATCTTCTTCTTCACTCTTCCCTTTCATTCTCTCACCCCCCTCTCTCTTCAACCCTTCGCCACACAATGTCATCAGAACCACCACCCTCCGCCTTTGACAAACTCTTGTCCGGCGCACGCGCCTCCAAGAAGAAACTACCACCTCCATCATCTTCCAAGAAACGAAAAGCTCCTACTCCTCCCCCTTCTTCATCCCCACACAAAACCCTAGAAACCGTTATAAACCCTAATAACAACCTCAAAACCGTTCAAAATCCCGAAGAAACCGTTCATGAAGATCCATCGAGCAAGATCCGCAACACTTCATCTTCTTCCAACGGGATAGTCGCTGAATTGAAGGAAAAAGTTCCGGAGCTGAAGAAGAAACCGGAGAATTTCGATCCGAGTTCGGTTGTTTGCTGGGAGAAAAACAAACCTGTGCCGTTTTTGTTTCTCTCTTTAGCGTTTGATTTGATTAGCAAAGAGAGGGGAAGAATTGTGATCACTGAGATTGTGTGTAATCTGTTGAGGACTGTGATACATGCCACACCTGATGATCTTGTTCCGGTTGTTTATCTTTCAGCGAATAAAATTGCGCCGGCGTATAAAGGGTTAGAGTTGGGAATCGGTGATGCTTCGATCATTAGGGCGCTTGCTGATGCGTGTGGAAGGACTGAGAAACATATTAAGTCTCAATATAAGAAAAAGGGTGATTTAGGTTTAGTTGCACAAGCGAGCCGTTCTTCACAGACTACGATGCGGAAGCATGATGCTTTGACTATTAGGAAGGTTTTCGACACATTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTCCTTTTCGCTGCAACTGATTGTGAACCTCTATATATAATCCGTTTGCTACAGACAAAATTGCGAATTGGATATGCTGAGCAAACTCTCTTGGCTGCATTAGGCCAAGCTGCAGTGCACACAGAAGAGCATTCTAACCCGCCTCCAGGAATTAAGTCTCCTTTAGAAGAGGCAGCAAAGATTGTTAAAAAAGTCTATTCTGTTCTTCCCGATTATGACAAAATTGTGTCTGCACTCCTTAAGGATGGTGTATGGGAACTTCCAAAGAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCTATGCTGTCAAAAGCAACCAAGAGTGTATCTGAAATTCTAAATAAGTTCCAGGGTGTAGAGTTTACGTGTGAGTACAAATACGATGGAGAGCGTGCTCAGATACATTTCTTGGAGAATGGCTCAGTAGAGATTTACAGTAGAAATGCTGAACGGAACACTGGGAAGTATCCTGATGTTATTGCTGCAGTTTCAAGATTAAAAAAAACAACAGTATCATCTTTTATCCTTGATTGTGAACTTGTTGCATATGATCATGGAAAACAGACAATCCTTCCTTTCCAGGTGCTTAGTACTCGATCCCGCAAAAATGTAGCAAAGAGTGACATAAAGGTTGCTGTTTGTGTATTTGCTTTTGATTTGTTGCACCTTAATGGCCACAAACTTTTTCAGGAAAACCTTAAAATCCGTAGAGAGCATCTATACACCTCTTTTGAGGAGGAGTCTGGATTCCTTCAGTTTGCGACATCAACTACATCAAATGATGTCGAGGAGATACAAGAATTTTTTGACAAAGCTATTGAAGCAAGTTGTGAGGGATTAATTGTTAAAACATTACATGAGGACGCCACATATGAACCCTCAAAGCGGTCAAACAACTGGCTGAAACTGAAGAAAGATTATACCGATAATTTAGGGGACTCCCTAGATTTGGTACCTATTGGTGCTTTCCATGGTCGTGGTAAACGCACAGGAGTGTATGGTGCTTTTCTCGTTGCTTGCTATGACAACGAACGCAACGAATTTCAAAGTATTGTCAGGCTAGCAACTGGATTCAAAGAGCAAGAGCTTAAAGAACGTTCTACTATCCTTCGCTCTAAAGTGATTCCCAAACCAAAGGCATATTATAGTTGTGGAGAATCAATCAATCCTGATGTTTGGCTTGAAGCTAGCGAGGTGTGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCTGTTTACCGAGCTGCAGAGGGCAAAGTAGATTCCGTTAAGGGCATATCTCTTCGATTTCCGCGTTTCATTCGAGTTCGACCTGACAAAACTCCTGAACAGTCCTCTTCGTCTGAGCAGATTGCAGAAATGTATAATGCTCAAAAACTCAATCACACCGGCCAACAGGATGACGATGAAGATGATTAA 2322 0.4251 MLFKPFFPLFSQHFAFPSNLLLHSSLSFSHPPLSSTLRHTMSSEPPPSAFDKLLSGARASKKKLPPPSSSKKRKAPTPPPSSSPHKTLETVINPNNNLKTVQNPEETVHEDPSSKIRNTSSSSNGIVAELKEKVPELKKKPENFDPSSVVCWEKNKPVPFLFLSLAFDLISKERGRIVITEIVCNLLRTVIHATPDDLVPVVYLSANKIAPAYKGLELGIGDASIIRALADACGRTEKHIKSQYKKKGDLGLVAQASRSSQTTMRKHDALTIRKVFDTFHLIAKESGKDSQEKKKNHIKSLLFAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVHTEEHSNPPPGIKSPLEEAAKIVKKVYSVLPDYDKIVSALLKDGVWELPKKCDFTPGVPVGPMLSKATKSVSEILNKFQGVEFTCEYKYDGERAQIHFLENGSVEIYSRNAERNTGKYPDVIAAVSRLKKTTVSSFILDCELVAYDHGKQTILPFQVLSTRSRKNVAKSDIKVAVCVFAFDLLHLNGHKLFQENLKIRREHLYTSFEEESGFLQFATSTTSNDVEEIQEFFDKAIEASCEGLIVKTLHEDATYEPSKRSNNWLKLKKDYTDNLGDSLDLVPIGAFHGRGKRTGVYGAFLVACYDNERNEFQSIVRLATGFKEQELKERSTILRSKVIPKPKAYYSCGESINPDVWLEASEVWEVKAADLTISPVYRAAEGKVDSVKGISLRFPRFIRVRPDKTPEQSSSSEQIAEMYNAQKLNHTGQQDDDEDD* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1662 773 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 140 391 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mtr4g1662 773 Pfam DNA ligase N terminus 159 334 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mtr4g1662 773 Gene3D - 136 403 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mtr4g1662 773 Gene3D DNA ligase/mRNA capping enzyme 430 555 - -
Mtr4g1662 773 ProSiteProfiles ATP-dependent DNA ligase family profile. 507 643 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mtr4g1662 773 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 65 773 - -
Mtr4g1662 773 MobiDBLite consensus disorder prediction 84 103 - -
Mtr4g1662 773 CDD OBF_DNA_ligase_I 613 758 - -
Mtr4g1662 773 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 425 433 IPR016059 GO:0003909
Mtr4g1662 773 PANTHER DNA LIGASE 1 65 773 - -
Mtr4g1662 773 MobiDBLite consensus disorder prediction 32 123 - -
Mtr4g1662 773 CDD Adenylation_DNA_ligase_I_Euk 390 608 - -
Mtr4g1662 773 Gene3D - 411 609 - -
Mtr4g1662 773 SUPERFAMILY Nucleic acid-binding proteins 613 759 IPR012340 -
Mtr4g1662 773 Pfam ATP dependent DNA ligase domain 401 605 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mtr4g1662 773 Gene3D - 610 772 IPR012340 -
Mtr4g1662 773 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 393 611 - -
Mtr4g1662 773 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 217 756 IPR000977 GO:0003910|GO:0005524|GO:0071897
Mtr4g1662 773 Pfam ATP dependent DNA ligase C terminal region 630 741 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mtr4g1662 773 ProSitePatterns ATP-dependent DNA ligase signature 2. 579 605 IPR016059 GO:0003909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1662 Mtr-Chr4 29083218 29091091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1662 18 773 Core DNA Replication Machinery Family AT1G08130 61.899 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1662 K10747 - gmx:100783155 1047.34