Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1660 ATGGAAACCATGCCAGAGTCATATGAATCCACTAATACACACTCTTCTTCAAATTTTGGATGCACACATTACAGAAGGAGATGCAAGATCATAGCACCATGTTGTAATGAAGTTTTTGACTGTAGGCACTGCCACAACGAAGCTAAGAACTCAGATGAGATTAAGCCAGATTGTCGTCATGATATTCCGCGTCATGAAGTTAAAAAGATTATTTGCACCTTATGTGACACAGAACAAGATGTTCAACAAAACTGCATAAACTGTGGAGTATGCTTGGGAAAGTACTTTTGTGGTACATGCAAATTCTTTGATGATGATATTTCAAAGCAGCAATACCACTGTGATGAATGTGGCATCTGCAGAACTGGTGGCAGTGATAACTTTTTCCATTGCAAAAAATGTGGATGTTGCTATTCCGTCGAAATCAAAGAGGGGCATAATTGTGTAGAAAGAGCAATGCATCATAATTGTCCTATTTGCTTTGAGTATCTGTTTGATACATTGAGAGAAATCAGTGTCTTAACTTGTGGCCACACTATACATTTTGAGTGTGTTAAAGAGATGGAAAAACATCATAGGTACTCGTGTCCTGTTTGCTCAAAATCTATCTGTGATATGTCAAGTGTGTGGAAGAACCTTGATGAAATGCTTTCCTCAACTCCAATGTCTGAATCATACAAAAATAAGAAGGTATGGATATTGTGCAATGATTGTGGTGTAAACTCTCATGTGCAATTCCACATTGTGGCACATAAGTGTTTAAGTTGCAACTCCTACAACACAAGGCAAATACAAATAGTACCTTCTAGTTCTTGCTCATCTAGGGTGGAAGAGATGATTAAATGA 846 0.3771 METMPESYESTNTHSSSNFGCTHYRRRCKIIAPCCNEVFDCRHCHNEAKNSDEIKPDCRHDIPRHEVKKIICTLCDTEQDVQQNCINCGVCLGKYFCGTCKFFDDDISKQQYHCDECGICRTGGSDNFFHCKKCGCCYSVEIKEGHNCVERAMHHNCPICFEYLFDTLREISVLTCGHTIHFECVKEMEKHHRYSCPVCSKSICDMSSVWKNLDEMLSSTPMSESYKNKKVWILCNDCGVNSHVQFHIVAHKCLSCNSYNTRQIQIVPSSSCSSRVEEMIK* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1660 281 SUPERFAMILY CHY zinc finger-like 14 91 IPR037274 GO:0008270
Mtr4g1660 281 SUPERFAMILY Zinc hairpin stack 93 150 IPR037275 -
Mtr4g1660 281 Pfam CHY zinc finger 21 102 IPR008913 GO:0008270
Mtr4g1660 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 9 279 - -
Mtr4g1660 281 ProSiteProfiles Zinc finger CHY-type profile. 14 90 IPR008913 GO:0008270
Mtr4g1660 281 SUPERFAMILY RING/U-box 155 204 - -
Mtr4g1660 281 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 9 279 - -
Mtr4g1660 281 SMART ring_2 157 199 IPR001841 -
Mtr4g1660 281 Pfam Zinc-ribbon 204 262 IPR039512 -
Mtr4g1660 281 Gene3D - 228 268 - -
Mtr4g1660 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 221 IPR013083 -
Mtr4g1660 281 ProSiteProfiles Zinc finger RING-type profile. 157 200 IPR001841 -
Mtr4g1660 281 ProSiteProfiles Zinc finger CTCHY-type profile. 92 156 IPR017921 -
Mtr4g1660 281 Pfam Ring finger domain 156 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1660 Mtr-Chr4 29067984 29072021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1660 19 274 C2H2 Transcription Factor Family AT3G18290 39.245 4.40e-52 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1660 4 29067984 29072021 Mtr4g1660 4 29067984 29072021 ECH