Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1659 ATGGTTTCTGCTCCTAAACCTAAGAGGACAAGAATGTCTTGTTCACATGAAGAACTAAAGGACAATATTGTTGTTGAAGCTGTCGCAAAAGATGGTGATGATGTTGAGAAGAAAATGAAAAATAAGAAGAAGAAGAAGAATAAGAATAAGAAGGAATCAAATCTACGAAGCAATGAATCAAAGAATCTCCAACCTAGTCCAAAACATACAACTCAGACTAGTAATAGTCACGCCTCACCAACAACCATTAATTATAGATCCCCCGAACTAATTGTGCCTCAAACTTCATTATATAAAGGAATGAAGTGCAGCACATATTGTGAAAAGAGATCGCGAAGACTAAAAAGAAAGGATCAATGCTTGCATAAGTTGGTCTTTCAAGAAAATGTGTTGGAAGATGGAGCTGCAGTAGGATACTTTGTTTATGAAGAGAAACAATTGCAGGGAGAAATAAACATAAAGCAATCTGGTATTTTGTGTGATTGTTGTAAAGAAGTGGTCAGCCCTTCTAAGTTTGAAGCACATGCTGGTTGGGCATCGCGACGAAAACCTTACTTTCACATACGCACAACTGACGGAGTCTCATTACATCAGTTGGCCATTAATCATAGAATTTCTATTTCCAATAGTGATGAACACTGCAGTAAGTGCAAACAAAGAGGGAATTTGTTATGTTGTGATGGATGCCAAAGAGCTTTTCACTTAGGGTGTATTCCTGTTGAATCCCCACCAAAAGAGAAGTGGTACTGTGAATATTGTCGTAATAAACTTCAGAAGGACAAAAATGTAGAGCATAAAGAAAATGTTGTGACAACTCAAAAGATTATAGAGAGTGATCCTTCGGAACAAATAGCCAAGATATGCACTCTTTCGGTAAAACATAAAGAGGTTGAGCATAGTTCATGTGCATTGTGCAGCGAACGACATTTCAACAATGGTGAGTTTAGTCCATGGACAGTAATGATTTGTGACCAGTGTGAGAAGGACTATCATGTTGGGTGTTTGAAGGATCATAACATGGCTAACCTAAAGAAAGTACCTAAACATTATTGGTTCTGCGGCGTGGATTGTTATGATATTCACATGAAACTAAAGAATTTTATGGCTCGTGGGGATGTGCTTCTTTCAGATTCCCTCCTAAGTTTGATTAAAAATAAGAAGGAACAAAAAGGTTTAGAAACTGAATTTGGTCTTGATATAAAATGGAAGGTTTTCAACCGACAGTTGATTGTTTCTAAAATTATTACTAGTTCCTTGCTTTCCGATGTTGTTACTATCTTTCATGAACAATTTGATTCCATAGTTGTTACCGGAACAAAAATTGATTTAATTCCAGCAATGGTTAAAGGGAGGAAGATCAAAGATAAATATTATTTTGGTGGAATGTATTGTGCAGTGCTCATTGTCAACCAAGTGGTTGTATCAGCTGGGATATTTCGTGTTTTTGGAAAAGAAGTGGCGGAACTTTCCTTAATTGCAACTAAGGCTGAATACCAAAAACAGGGTTTCTTCAAGTGCCTACTTTCCTGCATAGAGAATGTACTTAAGGAATTAAAAGTAGAAAGGTTAGTCCTACCAGCAGCTCATGAAGCAGAGTCAATGTGGATAGATAAATTCGGGTTCACAGAGCCCAACCAAGGGTTGATAAACAATTTTAGGAAATTCTACCATAATTTGATGATATTTGAAGGGACGTCGTTACTACAGAAGAAGTTGGTCCTTCCATCTCAATAA 1734 0.3697 MVSAPKPKRTRMSCSHEELKDNIVVEAVAKDGDDVEKKMKNKKKKKNKNKKESNLRSNESKNLQPSPKHTTQTSNSHASPTTINYRSPELIVPQTSLYKGMKCSTYCEKRSRRLKRKDQCLHKLVFQENVLEDGAAVGYFVYEEKQLQGEINIKQSGILCDCCKEVVSPSKFEAHAGWASRRKPYFHIRTTDGVSLHQLAINHRISISNSDEHCSKCKQRGNLLCCDGCQRAFHLGCIPVESPPKEKWYCEYCRNKLQKDKNVEHKENVVTTQKIIESDPSEQIAKICTLSVKHKEVEHSSCALCSERHFNNGEFSPWTVMICDQCEKDYHVGCLKDHNMANLKKVPKHYWFCGVDCYDIHMKLKNFMARGDVLLSDSLLSLIKNKKEQKGLETEFGLDIKWKVFNRQLIVSKIITSSLLSDVVTIFHEQFDSIVVTGTKIDLIPAMVKGRKIKDKYYFGGMYCAVLIVNQVVVSAGIFRVFGKEVAELSLIATKAEYQKQGFFKCLLSCIENVLKELKVERLVLPAAHEAESMWIDKFGFTEPNQGLINNFRKFYHNLMIFEGTSLLQKKLVLPSQ* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1659 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 359 IPR013083 -
Mtr4g1659 577 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 455 543 IPR016181 -
Mtr4g1659 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 275 IPR013083 -
Mtr4g1659 577 Gene3D - 400 572 - -
Mtr4g1659 577 ProSiteProfiles Zinc finger PHD-type profile. 211 256 IPR019787 -
Mtr4g1659 577 PANTHER AUTOIMMUNE REGULATOR 31 570 - -
Mtr4g1659 577 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 410 565 IPR000182 GO:0016407
Mtr4g1659 577 PANTHER AUTOIMMUNE REGULATOR 31 570 - -
Mtr4g1659 577 SMART PHD_3 213 254 IPR001965 -
Mtr4g1659 577 SMART PHD_3 301 357 IPR001965 -
Mtr4g1659 577 MobiDBLite consensus disorder prediction 10 40 - -
Mtr4g1659 577 SUPERFAMILY FYVE/PHD zinc finger 293 355 IPR011011 -
Mtr4g1659 577 SUPERFAMILY FYVE/PHD zinc finger 205 258 IPR011011 -
Mtr4g1659 577 ProSitePatterns Zinc finger PHD-type signature. 214 253 IPR019786 -
Mtr4g1659 577 MobiDBLite consensus disorder prediction 58 86 - -
Mtr4g1659 577 Pfam Tify domain binding domain 153 200 IPR032308 -
Mtr4g1659 577 MobiDBLite consensus disorder prediction 1 86 - -
Mtr4g1659 577 CDD NAT_SF 464 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1659 Mtr-Chr4 29060429 29065135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1659 110 572 PHD Transcription Factor Family AT2G36720 44.111 2.63e-131 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1659 - - mtr:MTR_4g057290 1003.05