Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1658 ATGTTCCAACTTTCAACCAAAATAAACACAATGGATTTTTATCCAGAGACACTTGCAAACATTAACAATGACTATGAGTTACATGATTTCATTGACGATCCAAACTTTGATCAATTCATCAATTTGATTCGTGGGGAGGAGAATGAAGATACTACTATTTGTAACTTCAATTCTGACCTTATAATGAATCAAAGTTTTGTTGATAACTCACTCCTTTCATTTCCTTCAAACCCATTTGATCACAACATAGAAAATACTATCACTGCTACTTTTGATCCTACTTCTTCACTTGGTTCTTTCTCTTGTTTTGATGGAGAAGCTAAGGAGGAATTAAGAGTAGAAAATGATGGTGATAACTACTCCTCTCCTGCAACAACAACAACAAGCATTACCACAACAACTACAAGTGGTGATACTAAGCCAAAGTCGAAAAATGATAGATCCAAGACTTTGGTTTCTGAGAGGAGGAGGCGAAGCCGAATGAAGGATAAGCTTTACGCATTGCGTTCTTTGGTTCCCAATATAACTAAGATGGATAAGGCTTCTATAATTGGAGATGCTGTTTCATATATGCATGAACTTCAATCACAAGCCAAGAAGCTTAAGGCTGAGGTTGCAGGACTTGAAGCATCATTAGCAGTGTCCAAAACTCAACATGGATCAATTGATAACCCCAAAAAGATTCAATTTACTAACAACAATGGTTCAATATGCAAGAAAATTGTCCAGATTGATATGTTTCAAGTAGATGAAAGAGGGTTTTATGTTAAAATAGTATGCAATAAGGGAGAAAGGGTGGCTGCTTCATTATACAAGTCTCTTGAATCTTTGAGAGATTTCAATGTTCAGAATTCAAATTTGGCCACTGTTTCTGATGGTTTTCTATTTACATTTTCATTGAATGTGAAAGACTCTGGACCAGAAATTAACCTGCCAAATTTAAAGCTATGGGTGATTAGTGCTTTTCTAAACCAAGGCTTTGAATTCATACCTTCTTTTCACGCTTGA 1008 0.3562 MFQLSTKINTMDFYPETLANINNDYELHDFIDDPNFDQFINLIRGEENEDTTICNFNSDLIMNQSFVDNSLLSFPSNPFDHNIENTITATFDPTSSLGSFSCFDGEAKEELRVENDGDNYSSPATTTTSITTTTTSGDTKPKSKNDRSKTLVSERRRRSRMKDKLYALRSLVPNITKMDKASIIGDAVSYMHELQSQAKKLKAEVAGLEASLAVSKTQHGSIDNPKKIQFTNNNGSICKKIVQIDMFQVDERGFYVKIVCNKGERVAASLYKSLESLRDFNVQNSNLATVSDGFLFTFSLNVKDSGPEINLPNLKLWVISAFLNQGFEFIPSFHA* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1658 335 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 21 331 - -
Mtr4g1658 335 Gene3D - 138 211 IPR036638 GO:0046983
Mtr4g1658 335 SMART finulus 151 200 IPR011598 GO:0046983
Mtr4g1658 335 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 21 331 - -
Mtr4g1658 335 Coils Coil 191 218 - -
Mtr4g1658 335 MobiDBLite consensus disorder prediction 118 139 - -
Mtr4g1658 335 MobiDBLite consensus disorder prediction 113 158 - -
Mtr4g1658 335 Pfam Helix-loop-helix DNA-binding domain 153 195 IPR011598 GO:0046983
Mtr4g1658 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Mtr4g1658 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 223 IPR036638 GO:0046983
Mtr4g1658 335 MobiDBLite consensus disorder prediction 140 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1658 Mtr-Chr4 29045593 29047894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1658 17 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 50.307 2.85e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g1658 HLH 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1658 - - gmx:100805451 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1658 4 29045593 29047894 Mtr4g1658 4 29045593 29047894 ECH
Mtr2g2811 2 41578051 41579904 Mtr4g1658 4 29045593 29047894 PCT