Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1656 ATGGAAGAGTTTGTTATGGAGGAAAAAATGGTGGGTTTTTCTAAGAAAGATGCAACATACATAGCCAAAGGAAAACGCACTAAGAGGTTAAGATTTTTGTCTCCTTGTGGTGTTGTTGCTATGGCATCTAGTTGTTCAAGTGATGAGAGCAACATTGATCTTGAAGATGAAGATGAAGATGATGAAGAAGAAGATTTGGCTAAGTGTTTGATTCTTCTTGCTCAAGGTGGAAATCATAGGGAAGATGGTGGAGTTGTTGATGAGAATAAAAGGGTAAAGGGTAGTCATGGAAATAAAAAAATTGGTGAGACTAGCACAAAACTTGGTTTGTATATTTATGAATGCAAAACATGTAACAGAACTTTTCCTTCTTTTCAAGCTTTGGGTGGTCACAGGGCAAGTCACAAAAAACCTAAAATTATGGCTGAGGAGAAGAAACCACCATCACCACCGTCGCAGCAGCCTCGTCCACAGTCTTCATCACATGATTCGCAATCAGATAATCTGGTTGCGAATAGTGATGAGTATGAAGAAGCTGAGAAACCTCGTGGGCCCATGGTTTCTTTTCAAATGGGGAATCATGGTTTGAAAGCAGCTATTAATGGGAACAAGGCCAAGATTCATGAGTGTTCCATTTGTGGTTCAGAGTTCACATCCGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGTATCGGTGGCAAACGCCGCGGCTGTCGCAGCCCCGGATGAAAGAGTTAGGCCAAGGAATATTTTACAATTGGATCTTAACCTTCCGGCACCGGAAGAAGATATCCGCGAATCGAAGTTTCAGTTTCCGGCTACACAAAAATCAATGGTGATGGCTGCTGCTCCAGCTTTGGTGGGTTGTCATTATTAG 882 0.4252 MEEFVMEEKMVGFSKKDATYIAKGKRTKRLRFLSPCGVVAMASSCSSDESNIDLEDEDEDDEEEDLAKCLILLAQGGNHREDGGVVDENKRVKGSHGNKKIGETSTKLGLYIYECKTCNRTFPSFQALGGHRASHKKPKIMAEEKKPPSPPSQQPRPQSSSHDSQSDNLVANSDEYEEAEKPRGPMVSFQMGNHGLKAAINGNKAKIHECSICGSEFTSGQALGGHMRRHRVSVANAAAVAAPDERVRPRNILQLDLNLPAPEEDIRESKFQFPATQKSMVMAAAPALVGCHY* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1656 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 230 IPR013087 -
Mtr4g1656 293 Gene3D Classic Zinc Finger 110 230 - -
Mtr4g1656 293 MobiDBLite consensus disorder prediction 156 172 - -
Mtr4g1656 293 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 293 - -
Mtr4g1656 293 MobiDBLite consensus disorder prediction 129 190 - -
Mtr4g1656 293 MobiDBLite consensus disorder prediction 81 100 - -
Mtr4g1656 293 Pfam C2H2-type zinc finger 208 231 - -
Mtr4g1656 293 Pfam C2H2-type zinc finger 113 138 - -
Mtr4g1656 293 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Mtr4g1656 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Mtr4g1656 293 SMART c2h2final6 208 230 IPR013087 -
Mtr4g1656 293 SMART c2h2final6 113 135 IPR013087 -
Mtr4g1656 293 PANTHER ZINC FINGER PROTEIN ZAT5 1 293 - -
Mtr4g1656 293 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Mtr4g1656 293 SUPERFAMILY beta-beta-alpha zinc fingers 112 230 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1656 Mtr-Chr4 29020799 29022014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1656 17 293 C2H2 Transcription Factor Family AT2G28200 42.812 4.59e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g1656 zf-C2H2_6 7.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1656 - - aprc:113858527 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1656 4 29020799 29022014 Mtr4g1656 4 29020799 29022014 ECH
Mtr4g1656 4 29020799 29022014 Mtr1g3335 1 44525566 44527297 ECH
Mtr4g1656 4 29020799 29022014 Mtr1g2136 1 31442516 31443891 ECH
Mtr2g2814 2 41609954 41611152 Mtr4g1656 4 29020799 29022014 ECH
Mtr1g2136 1 31442516 31443891 Mtr4g1656 4 29020799 29022014 ECH
Mtr2g2814 2 41609954 41611152 Mtr4g1656 4 29020799 29022014 PCT