Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1650 ATGGCGATTGCTGGTTTGCATAGTGTGTCTGTGCTCGACTCGTCTTTTTTGAGGGATTCGCAGTCTCAGGCGTCGAGAAGGAGGGGAGATGGGAGAAGTGGAGGCAACCGGTCGTCTTCGCTTTTGCAAATGTGGCGGGAGATTGAGGATGAACATGCTGTGAGTCAAGTTCAAGGAAGAGCTGGTGAAGTAGTACTTGAACGAAGGAATAATGGGTCGATTGCGGATGTTTCGTTAGAAAATGCACCTGATAGCCCAGAGATCGGAGATAGGCGTGGTTTAGAAGATGTTGTTTTGCGTGAGAGTGAGTCGGATACATGGTCGCAGTCGCAAAGTCAGAACGAATCACATGATGATAATGAGGATTTAAACAATTCTAGCTGTGAAAACTCGTCTGTTTTCGGAGAAGTTGAAAGGGAAAGAGTGCGGCGAGTTTTCAGGGAATGGATGAATAGTGGATCAAACGTTTCCCGAAGAAGTGAAAGTCCTAGGGGAGAATGGCTTGGAGAAACCGAACAGGAAAGGGTGAGAGTTATAAGGGAATGGGTACAAACGAGCAGCGAGCAGAGAAGTGTTTCTTCTAGGGATAACAGGGAGCAGCCACATGCTGAAATTGGTACACAAATTGAACGTGTGCGTGATGGATTTGTCGCTAACCACAGTGAGGGACAAAATGAGTATACACGGAGGAGTATGCGTAAATTACGTGGCAGACAGGTTATGCTTGATATGCTTAAGAAGGCTGAGAGGGAAAGGCAGAGAGAAATTCACGAGTTGCTGGACCATCAGGCTGTATCACGTTTTCCCCATCGCAATCGCATTCAGGCATTGCTTAGAGGCAGGTTTTTGAGAAATGATAGATCTGTTGATCATAACAGGTCCACATCTGTAGCAGAAAGTGAATTAGGCTTATTGAGGCAAAGACAAACTGTATCAGGTCTAAGGGAAGGATTCTTCTCCAGAATGGACAGTACTGGTTGCAGCCAAGCAACCAGCAACCTATCTGATACCTCGTCAAACATTGATATTGATTTTAATACAAATGAACAAACTGGAGAAAGCAGTTCATGTATGTTCATTGAACCCACTAACGTCAGAGATAATAGGGTTGGGATATCTGGTGACCACTGTCTAGAAGGAATTACATCTGAGAGTTTAGATTGTCAAGAATCTACTGCCCATGTAGAAGGAAATCAGTTGCAGTGCTTGCAAATTGAGTCAGTAGATAGGCATTCATCATTCAGTGATGGGTGTGAAAGAAGAGATTACACTGGGCAAAATGTTGAGGTGGTGGCAATCAGAGATAGAGAGCATAATAATAATCAGGTATCCAGCGAGGTACATAATGAGCAATCTGAGCTGGGTGATATAAGTAACGGTGAAAACAATTCATCAAATCAAAGTGATTATACGGAGAGCAATGTTGTTGATGATGTGAATGGATCTGGTGCTCTAGAAGAGCAGCTGGAACAAATTGTTGAAAATGAAGGAAGTGGCTGGCATCAGAGTAACACTGAATGGAGAAATAGCACCGATGAAAATGTGGATGATAATCAGCTCAGAAATACAGCAAATGAGTGGCCTGAAAACAGTTGGGTCAACGAGGATGTAGAAAACCCTCATCTGCAAGAAGCTTCTGAAGTTTGGCAAGAAGATAGTGGCTTCCAAGAGGCCGTGGAAAATTGGTTAGGAGGACCTTCTGACCAAGAAACTGCTCCAAGTAGTAGAGTTCATAGTTATTATTTTCCTGATGATGACAATGTACACAATGTTGAACTCAGGGAACTTCATAGTAGGAGACGTGTGTCTAATCTCCTTGGAAGTAGTTTCCGTGCGAGTCTTGACCAGTTGATACAATCATATGTTGAAAGACAAGGTCACGCTAACATGGAGTGGGATCCAGAAGAAGCAGCCCCTTCTGCTAACCTTGAGCAGCAGAGTCAAGATCAGATTGTTGATCAGGAGGGTACTGTTAATAGTCCACTTGACTTGCCCTCTTTGCCTACACCTCCTACTCCACCTCTTTGGGATCAGCATCCTCATGGTGATAACTGGTCGCACAATGATGATTTGGAAATTATTAATGACTTGAGACTTGACATGGCTAGATTACAGCAAAGGATGAATACTATGCAGAGGATGCTTGAGGCATGTATGGATATGCAGCTTGAGCTGCAACGCTCAATAAAACAAGAAGTTTCTGCAGCACTAAATCGATCAGCTGGTTCATCAGGAATACGTGAATGCGATTCACTAGATGACAATTCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATTTGCTGCGAAAGCAATATTGATTCTTTATTGTACAGATGTGGCCATTTGTGCACATGTTCAGGATGTGCCAATGAGTTGCTTCAAAGTAGAAGGAATTGCCCAATGTGTCACGCCCCTGTGTTGGAGGTGATACGTACTTATTCTATACTATAA 2457 0.4343 MAIAGLHSVSVLDSSFLRDSQSQASRRRGDGRSGGNRSSSLLQMWREIEDEHAVSQVQGRAGEVVLERRNNGSIADVSLENAPDSPEIGDRRGLEDVVLRESESDTWSQSQSQNESHDDNEDLNNSSCENSSVFGEVERERVRRVFREWMNSGSNVSRRSESPRGEWLGETEQERVRVIREWVQTSSEQRSVSSRDNREQPHAEIGTQIERVRDGFVANHSEGQNEYTRRSMRKLRGRQVMLDMLKKAERERQREIHELLDHQAVSRFPHRNRIQALLRGRFLRNDRSVDHNRSTSVAESELGLLRQRQTVSGLREGFFSRMDSTGCSQATSNLSDTSSNIDIDFNTNEQTGESSSCMFIEPTNVRDNRVGISGDHCLEGITSESLDCQESTAHVEGNQLQCLQIESVDRHSSFSDGCERRDYTGQNVEVVAIRDREHNNNQVSSEVHNEQSELGDISNGENNSSNQSDYTESNVVDDVNGSGALEEQLEQIVENEGSGWHQSNTEWRNSTDENVDDNQLRNTANEWPENSWVNEDVENPHLQEASEVWQEDSGFQEAVENWLGGPSDQETAPSSRVHSYYFPDDDNVHNVELRELHSRRRVSNLLGSSFRASLDQLIQSYVERQGHANMEWDPEEAAPSANLEQQSQDQIVDQEGTVNSPLDLPSLPTPPTPPLWDQHPHGDNWSHNDDLEIINDLRLDMARLQQRMNTMQRMLEACMDMQLELQRSIKQEVSAALNRSAGSSGIRECDSLDDNSKWECVRKGLCCICCESNIDSLLYRCGHLCTCSGCANELLQSRRNCPMCHAPVLEVIRTYSIL* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1650 818 MobiDBLite consensus disorder prediction 495 509 - -
Mtr4g1650 818 MobiDBLite consensus disorder prediction 99 134 - -
Mtr4g1650 818 MobiDBLite consensus disorder prediction 187 229 - -
Mtr4g1650 818 ProSiteProfiles Zinc finger RING-type profile. 766 805 IPR001841 -
Mtr4g1650 818 MobiDBLite consensus disorder prediction 495 517 - -
Mtr4g1650 818 PANTHER PROTEIN, PUTATIVE-RELATED 690 817 - -
Mtr4g1650 818 PANTHER PROTEIN, PUTATIVE-RELATED 1 690 - -
Mtr4g1650 818 MobiDBLite consensus disorder prediction 192 209 - -
Mtr4g1650 818 Coils Coil 694 721 - -
Mtr4g1650 818 CDD mRING-HC-C3HC5_NEU1 766 804 - -
Mtr4g1650 818 MobiDBLite consensus disorder prediction 657 683 - -
Mtr4g1650 818 Pfam Zinc finger, C3HC4 type (RING finger) 763 810 - -
Mtr4g1650 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 816 IPR013083 -
Mtr4g1650 818 SUPERFAMILY RING/U-box 765 812 - -
Mtr4g1650 818 Coils Coil 245 265 - -
Mtr4g1650 818 MobiDBLite consensus disorder prediction 444 478 - -
Mtr4g1650 818 MobiDBLite consensus disorder prediction 17 38 - -
Mtr4g1650 818 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 690 - -
Mtr4g1650 818 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 690 817 - -
Mtr4g1650 818 MobiDBLite consensus disorder prediction 435 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1650 Mtr-Chr4 28876522 28883866 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1650 - - gmx:100801329 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1650 4 28876522 28883866 Mtr4g1650 4 28876522 28883866 ECH
Mtr2g2823 2 41727550 41734176 Mtr4g1650 4 28876522 28883866 ECH
Mtr2g2823 2 41727550 41734176 Mtr4g1650 4 28876522 28883866 PCT