Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1649 ATGGAAATCTACAACCGCAGGTTGCTCCTACTCAACGAGGATGTTCCAATCTCAACATCCATATCACCTTTTCCTCAAATCCAACCAAACGCATCTTCACCGTCCATTTCAATCACACCCCCATCAAAAACTTTTACACCCCCTCTACAATTACAATTACCATCCCATCCAATATTCTCTTCCAACATAGCCTACATCTTCCTCCTCCTCTTCTCCACCCTTTTCTTCCTTGCCTTCATCCTCTTATCATTTCGCGAACTTTCCTTCCGACGCCGGCGTAGATATTCACTGCGGCAGGGTTTGGATTCTGCCGCGGTGAAGTCTCTGCCGATGTGTGAGTATAAGGAAGATGTTAAGCAACCAGACTGTGTGATATGTTTGGAGGAGTTTGAAGTTTGCGAGGAGGTGAAGATGATTCCATATTGTAAGCACGTGTTTCATGCGGAGTGTATTGACACGTGGCTTTCTGCGCACGTGACATGCCCTATCTGCAGGTGTGTTATTGTCGTTTGTGGCGGTGGTGGGAATGTGGATGAGCATGTGGGAAGATCAACGGTTGAGAATGAAGGAGATGGAGAAGTGGGGTAG 588 0.4694 MEIYNRRLLLLNEDVPISTSISPFPQIQPNASSPSISITPPSKTFTPPLQLQLPSHPIFSSNIAYIFLLLFSTLFFLAFILLSFRELSFRRRRRYSLRQGLDSAAVKSLPMCEYKEDVKQPDCVICLEEFEVCEEVKMIPYCKHVFHAECIDTWLSAHVTCPICRCVIVVCGGGGNVDEHVGRSTVENEGDGEVG* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1649 195 PANTHER RING-H2 FINGER PROTEIN ATL57 46 178 - -
Mtr4g1649 195 SMART ring_2 123 164 IPR001841 -
Mtr4g1649 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 169 IPR013083 -
Mtr4g1649 195 PANTHER RING FINGER DOMAIN-CONTAINING 46 178 - -
Mtr4g1649 195 SUPERFAMILY RING/U-box 108 170 - -
Mtr4g1649 195 CDD RING-H2_EL5_like 122 165 - -
Mtr4g1649 195 Pfam Ring finger domain 122 165 IPR001841 -
Mtr4g1649 195 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1649 Mtr-Chr4 28872436 28873023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1649 59 165 C3H Transcription Factor Family AT2G27940 42.336 2.04e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1649 - K10664 mtr:MTR_4g056590 331.643