Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1643 ATGTCTCGTCGCGGTGGCGCAAACCATTATGATCCTCGCCGTAACCAACTTTCTCCGGCGACTTCTCAACAATCTTCCGTCAATGCTCCAGGATCAGGCCGTGGCCGTGGTGCAAACCATCCCGATTCTCACCGTAACCAACCTTCTCCGCCGATTTCACAACAATCATCCATCAATGCTTTACTATCAGGCCGTGGTGCTGGTCGTGGTTCACACGCCGGACACACCGTTCCATCTTCCACTCAAACTCCGGTTACAGTCACCGCTTCTTCATCAACATCATCGCCGGTTATTTATCATCCATCTGTCGTAGCACCGGTTGCCGCTGGTTCGAGTTCGGTTTCAACTGTTCCATCTTCGTCTCTGCCTCCGACGACAGCATTGCTGAGTTCTGAACTTGAAAAGAAGCTTACACTGGAGACGGTTCCGGAGGCTTCTGCTCCGTCGTCTCAGAAGGCGACAAGGTTCCCTGACCGTCCTGGTTTCGGTCAAGTAGGAAGGAAGATTCGAGTTCGCGCCAATCATTTCCATGTGCAAGTCGCTACTAATAAAGTTCTTCACCATTACGATGTATTGATTGCACCTGAGATTGCATCGAAGAAAGTGTCCAGGGATGTTATCAATCAGTTGGTGAAAATGCATAAGGAGTCCCTATTGGGGAATAGGATTCCTGCCTATGATGGGAGAAAGAGTCTGTTTACTGCTGGTCCATTACCATTTACGTCGAAGGTTTTTGTGATTAACTTGGTTGATGAGAACAAAGGATCCTCTTCTGGTTCTGACACGAAAAAGCGTGAACGCGAGTTTAAGGTTACAATTAAGTTAGCTTCGGAACCCGATTTGAACCATCTTGCTCAGTTTCTCCGTCGTTTGCAGCTGGATTGTCCTTATGAAACCATACAAGCTCTTGATATTACTTTGCGAGCAACTCCATCTGAAATGTATACTGTTGCAGGGAGGTCATTTTTCTCTCCCCGTTTGGGGGCACAGGGGCCTCTTGGCGGTGGGACAGAATATTGGAAAGGCTATTATCAAAGCCTTAGGCCAACACAGATGGGATTGTCCCTCAATATTGATGTTGCTTCGAGGGCTTTTTATGAACCGATTCTTGTGACTGACTTTATTTCTAAGAATTTTAAGTTGAATTTTTCAAGGCGACTGTCCGATCAAGATCGTGTCAAGATCACGAAAGCCTTGAGAGGTCTTAAGGTAAGATTCTCTCGCGGAGAGATCATAAGGAGTTACAAGGTGACCGGTGTCTCAAAAGAGCCACTCAGAGACCTAACGTTCATGCTTGATGACAAAGTAACTCGGAAAAAAGTTGTTGATCATTTCCATGAGAGATACGGTACTGTGTTAAAGCATCCACTTCTTCCCGCTCTCCAAGCCGGAAGTGACACGAGGCCTATGTATTTTCCAATGGAGCTTTGTCAAATTGAGCCTGGACAAAGGTACTCCAAAAGATTGAACGAAGAGCAAGTAACTAATCTTTTAAGGGCCAACTGTCAGCGTCCCCATCAGAGGGAAAGTGATATTAAAAATATCGTGAAGCAGCACCGTTTCAACATAGACGAAGTTGTGTGTGAGTTTGGTATCAATGTAAGGGAGGAACTTGCTTTGGTTGATGCCCGTGTTTTGCCTCCCCCAACGCTCAAATATGGTGGAGAGTCAAAAATTAACCCCATGATGGGACAATGGAATATGATGAAACATAAAGTGGTTAATGGTGGCAAGGTGGAATTTTGGAGTTGCCTTAGCTTTTCTAGATTGAACCCAACTCAATTTTGTGCGGAGTTGGCTATTATCTGTCAAGCCAAGGGAATACTTTTCAACCGAGATCCTTTGGTACCTATAGCCCCAGCCAATTCAAATGAAATTGAGAAAGAGCTTGAGGAATTCGACAAGTACTGCAAGGCAAAACTTAATAGTACAAACCAGAAAGGAAGGCTGCAACTGTTGATAGTTATTTTGCCTGATTTCAAGGGGAGGTTTTATGACCAAATAAAGCGTGAATGTGAAACTAAATTAGGAATTGTGACTCAATGTTGCGAGCCAAGGAAAGTGGCAAAGATGAATAAAATGTATCTGGAGAATTTGGCTTTAAAGATTAATGTTAAGGTTGGTGGTCGTAACACCGTGCTGAATGATGCAGTTATATATAATATTCCCCTAGTAACTGATAAACCAACTATAATATTTGGAGCGGATGTAACACACCCTCATCCAGGAGAAGACTCAAGTCCTTCTATAGCTGCAGTGGTGGCATCCATGGATTGGCCTTGCGTCACAAAGTACAGGGGGATGGTTTCTTCCCAGATTCATCGGGAAGAAATTATTCAAGATCTTTATACAGAAACAAAACATCCTCAAAAGGGAACTGTGCCTGGTGGAATGATAAGGGAGTTACTCCTGGCTTTCTATAGATCAAATAATAAACGGAAGCCTGAGAGGATCATATTTTACAGAGATGGAGTAAGTGAAGGGCAGTTTAGTCAGGTTTTGCTGTATGAGATGGATGCAATTTGGAAGGCTTGTGCCTCATTTGAAGAGGGGTATCTGCCAAAAGTTACATTTGTGGTTGTCCAAAAGAGACATCACACCCGATTCTTTCCGGTCAGTTCTGATCAGACAGATAAAAGTGGAAACATAATGCCAGGAACTGTGGTAGATACAACCATTTGCCATCCCAGGGAATTTGATTTTTATCTGAACAGCCATGCTGGGATTCAAGGGACTAGTCGACCAACTCATTATCATGTGTTGTTTGATGAAAATAACTTTAGTGCAGATCAGTTACAGGGTTTAACCAATAACTTATGTTACACTTATGCAAGGTGTACTCGATCGGTGTCAATAGTTCCTCCTGCTTATTATGCCCACTTGTTAGCTTCCCGAGCTCGCTGCTACATTAGTGATGTGGAAAATCATGATTCCGGTTCTGCAAGTGGTAATAGGAGTGCCCCCAACTCTGTTGCAACACTGCCCTCAATTATGGGAAACGTTTTAGAAGTTATGTTTTACTGTTGA 3027 0.4381 MSRRGGANHYDPRRNQLSPATSQQSSVNAPGSGRGRGANHPDSHRNQPSPPISQQSSINALLSGRGAGRGSHAGHTVPSSTQTPVTVTASSSTSSPVIYHPSVVAPVAAGSSSVSTVPSSSLPPTTALLSSELEKKLTLETVPEASAPSSQKATRFPDRPGFGQVGRKIRVRANHFHVQVATNKVLHHYDVLIAPEIASKKVSRDVINQLVKMHKESLLGNRIPAYDGRKSLFTAGPLPFTSKVFVINLVDENKGSSSGSDTKKREREFKVTIKLASEPDLNHLAQFLRRLQLDCPYETIQALDITLRATPSEMYTVAGRSFFSPRLGAQGPLGGGTEYWKGYYQSLRPTQMGLSLNIDVASRAFYEPILVTDFISKNFKLNFSRRLSDQDRVKITKALRGLKVRFSRGEIIRSYKVTGVSKEPLRDLTFMLDDKVTRKKVVDHFHERYGTVLKHPLLPALQAGSDTRPMYFPMELCQIEPGQRYSKRLNEEQVTNLLRANCQRPHQRESDIKNIVKQHRFNIDEVVCEFGINVREELALVDARVLPPPTLKYGGESKINPMMGQWNMMKHKVVNGGKVEFWSCLSFSRLNPTQFCAELAIICQAKGILFNRDPLVPIAPANSNEIEKELEEFDKYCKAKLNSTNQKGRLQLLIVILPDFKGRFYDQIKRECETKLGIVTQCCEPRKVAKMNKMYLENLALKINVKVGGRNTVLNDAVIYNIPLVTDKPTIIFGADVTHPHPGEDSSPSIAAVVASMDWPCVTKYRGMVSSQIHREEIIQDLYTETKHPQKGTVPGGMIRELLLAFYRSNNKRKPERIIFYRDGVSEGQFSQVLLYEMDAIWKACASFEEGYLPKVTFVVVQKRHHTRFFPVSSDQTDKSGNIMPGTVVDTTICHPREFDFYLNSHAGIQGTSRPTHYHVLFDENNFSADQLQGLTNNLCYTYARCTRSVSIVPPAYYAHLLASRARCYISDVENHDSGSASGNRSAPNSVATLPSIMGNVLEVMFYC* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1643 1008 Pfam N-terminal domain of argonaute 167 307 IPR032474 -
Mtr4g1643 1008 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 64 994 - -
Mtr4g1643 1008 Gene3D paz domain 363 485 - -
Mtr4g1643 1008 ProSiteProfiles Piwi domain profile. 652 971 IPR003165 GO:0003676
Mtr4g1643 1008 SMART DUF1785_2 316 368 IPR014811 -
Mtr4g1643 1008 Gene3D - 722 1008 IPR036397 GO:0003676
Mtr4g1643 1008 PANTHER ARGONAUTE108 64 994 - -
Mtr4g1643 1008 MobiDBLite consensus disorder prediction 14 32 - -
Mtr4g1643 1008 ProSiteProfiles PAZ domain profile. 369 481 IPR003100 GO:0005515
Mtr4g1643 1008 MobiDBLite consensus disorder prediction 1 97 - -
Mtr4g1643 1008 MobiDBLite consensus disorder prediction 74 97 - -
Mtr4g1643 1008 SUPERFAMILY Ribonuclease H-like 646 972 IPR012337 -
Mtr4g1643 1008 Gene3D - 545 716 - -
Mtr4g1643 1008 MobiDBLite consensus disorder prediction 42 62 - -
Mtr4g1643 1008 Pfam Argonaute linker 1 domain 319 367 IPR014811 -
Mtr4g1643 1008 MobiDBLite consensus disorder prediction 141 161 - -
Mtr4g1643 1008 CDD Piwi_ago-like 529 970 IPR045246 -
Mtr4g1643 1008 Pfam Piwi domain 653 970 IPR003165 GO:0003676
Mtr4g1643 1008 Pfam PAZ domain 390 498 IPR003100 GO:0005515
Mtr4g1643 1008 SUPERFAMILY PAZ domain 364 521 IPR036085 GO:0005515
Mtr4g1643 1008 SMART Piwi_a_2 652 971 IPR003165 GO:0003676
Mtr4g1643 1008 Pfam Argonaute linker 2 domain 507 553 IPR032472 -
Mtr4g1643 1008 CDD PAZ_argonaute_like 371 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1643 Mtr-Chr4 28773584 28780353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1643 113 1008 Eukaryotic Initiation Factors Gene Family AT1G48410 55.974 0.0 988
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1643 K11593 - gmx:100805246 1156.35