Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1642 ATGTCTCGTCGCGGTGGCGCTAACCATCCCGATCCTCGCCGGAATCAACCTTCTCCGGCAATTTCACAGTCATCCGTCAATGCTGCAGGATCAGGACGTGGTGGTCGTGGTTCACGCGGTGGACACACCGTTCCATCTCCGTCGTCTGTTCCCTCTCCGGTTCCGGTAACCGCTGCTTCATCAACCGCAGCTCCGGTTGTCGCTGGTTCAAGTTCCGCTCCAACGCGTCCATCTCCGGCTCTGGCTTCGGCGACGGTTTCTACTGAAGTGCTGAGTTCTGAGGTTGAAAAGCTTACTTTAGAGTCGACTCCGGCGGCGGCTTCAGCGCCGTCGTCTCAGAAGGCGGTGAGGTTTCCTAACAGACCTGGTATCGGTCGATTAGGAAGGAAAATTCAAGTTCGTGCTAATCATTTCCAGCTGCAAGTTGTTGATAAGGATCTTCATCACTACGATGTATCATTTGCGCCGGAGATTACTTCAAAGAAAGTGTCGAGGGATGTTATCAACCAGTTAGTGAAAATGCACCAAGAGTCCATGCTTGGGAATCGCATTCCTGCTTATGATGGGAGGAAGAGTCTGTTTACTGCTGGTCCTTTACCCTTTACTTCGAAGGTTTTTGTGATTAACTTGGTTGATGAGAACAAAGGATCCTCTTCTGGTTCTGACAAGAAAAAGCGTGAACGCGAGTTTAAGGTTACAATTAAGTTTGCTTCACAGACGGACCTGAACCATCTTACTCAGTTTCTCCGTCGTTTGCAGCTAGATTGTCCTTATGAAACCATACAAGCTCTTGATATTGCTTTGCGGGCAACTCCATCTGAAATGTATACTGTTTCAGGGAGGTCATTTTTCTCTCCCAGTTTGGGGGCACAGGGGCCTCTTGGCGGTGGGACCGAGTATTGGAGAGGTTATTATCAAAGCCTTAGGCCCACGCAGATGGGATTGTCCCTCAATATTGATGTTTCTTCGAGGGCTTTTTATGAACCGATTCGTGTGACTGACTTTATTTCTAAGAATTTTAAGTTGAATTTTTCAAGGCCACTGTCTGATCAAGATCGTGTCAAGATCAAGAAAGCCTTGAGAGGTATTAGGGTAAGAACATCTCACGGAGGTAACATAAGGAGTTACAAGGTGACCGGTGTCTCAAAAGAGCCCCTCAGAGATCTAATGTTCAAGCTTGATGACCAAGTAACTCGGAAAAAAATATCTGATTATTTCTATGAGAAATATGAAATTGTGTTACAGTATCCACTTCTTCCTGCTCTCCAAGCTGGAAGTGACACGAGGCCTATGTTTATTCCAATGGAGCTTTGTCAAATTGAGTCTGGACAAAGGTACTCCAAAAGATTAAACGAAGAGCAAGTAACAAACCTTTTAAGGGCTACCTGTCAGCGTCCTCAGCAGAGAGAAAATGATATTAAAAAGATTGTGACGCAGCACCGTTTCAACGCAGACAAAGTTGCAAAGGAGTTTGGTATCAATGTAAGGGAGGAACTTGCATTGGTTGACGCCCGTGTTTTGCCTCCCCCGATGCTCAAATATCATGGAAATGGCGGAGATTCAAAAATTGAACCCAGGATGGGTCAATGGAATATGATTAGACATAAAGTGGTTAATGGTGGCACGGTGCAATTTTGGAGTTGCCTTAGCTTTTCTAGATTGAACCCAACTCAATTTTGTGCGGAGTTGGTTAATATGTGTCAAGCCAAGGGAATAATTTTCAACAGAGATCCTTTGGTACCTATAGCCCCAGCCAATTCAAATCAAATTGAGAAAGAGCTTGAGAAATTAGATAAGAACTGCAAGGCAAAACTTAATAGCACAAACCCGAAAGATAGACTGCAACTGTTGATAGTAATTTTGCCTGATTCCAAGGGGAGGTTTTATGATGACATAAAGCGTGTTTGTGAAACAAGACTAGGAATTGTGACTCAATGTGTTAAACCAAATCAAGCTGCAAAGCTGAGTAAGCAGTATCTGGAGAATGTGGCTTTGAAGATTAATGTTAAGGTTGGTGGCCGCAACACAGTATTGTATGATGCCATTGAAAGAAGAATTCCTCTTTTAACTGATGTACCAACGATAATATTTGGTGCGGATGTAACACATCCTCAGCCAGGAGAAGATTCGTCTCCTTCAATAGCTGCAGTGGTGGCATCCATGGATTGGCCTCAAGTCACAAACTATAGGGGACTTATTTCTGCCCAGTCTCATCGGGAAGAAATTATTCAAGATCTGTACAAAACAACAGAACACCCACAGAGAGGAATTGTGCATAGTGGAATGATAAGGGAGTTGCTCCTGGCTTTCTATCGAAAAAATGGGTCTAAGCCTGCGAGGATTATATTTTACAGAGATGGAGTAAGTGAAGGGCAGTTTAGTCAGGTTTTGCTTTATGAGATGGATGCGATTAGAAAGGCTTGTGTTTCACTAGAGAGCAATTATCTGCCAAGAGTTACTTTTGTGGTGGTCCAAAAGAGACATCACACCCGTCTCTTTCCCACGAGTAACGACCAGACAGATCGGAGTGGAAATATAATGCCAGGAACTGTGGTTGACACAACCATTTGCCATCCCAGGGAATTTGATTTTTATCTGAACAGCCATGCTGGGATTCAAGGGACTAGTCGACCATCTCATTATCATGTGTTGTTCGATGAAAATGGCTTCAGTGCTGATCAGTTACAGAGTTTGACGAATAACTTATGTTACACTTATGCAAGGTGTACTCGTTCAGTGTCAATAGTTCCTCCTGCATATTATGCACACTTGTTGGCATTTCGAGCTCGCTACTACCTCAATGAAGTTGACACTTCTGATTCTGGTTCTGCAAGTGGCAACAGAAGTACCACCAACTTTGTGTCGACACTGCCCTCCATAATGGAAAATATCAAGGACGTTATGTTCTACTGTTGA 2916 0.4403 MSRRGGANHPDPRRNQPSPAISQSSVNAAGSGRGGRGSRGGHTVPSPSSVPSPVPVTAASSTAAPVVAGSSSAPTRPSPALASATVSTEVLSSEVEKLTLESTPAAASAPSSQKAVRFPNRPGIGRLGRKIQVRANHFQLQVVDKDLHHYDVSFAPEITSKKVSRDVINQLVKMHQESMLGNRIPAYDGRKSLFTAGPLPFTSKVFVINLVDENKGSSSGSDKKKREREFKVTIKFASQTDLNHLTQFLRRLQLDCPYETIQALDIALRATPSEMYTVSGRSFFSPSLGAQGPLGGGTEYWRGYYQSLRPTQMGLSLNIDVSSRAFYEPIRVTDFISKNFKLNFSRPLSDQDRVKIKKALRGIRVRTSHGGNIRSYKVTGVSKEPLRDLMFKLDDQVTRKKISDYFYEKYEIVLQYPLLPALQAGSDTRPMFIPMELCQIESGQRYSKRLNEEQVTNLLRATCQRPQQRENDIKKIVTQHRFNADKVAKEFGINVREELALVDARVLPPPMLKYHGNGGDSKIEPRMGQWNMIRHKVVNGGTVQFWSCLSFSRLNPTQFCAELVNMCQAKGIIFNRDPLVPIAPANSNQIEKELEKLDKNCKAKLNSTNPKDRLQLLIVILPDSKGRFYDDIKRVCETRLGIVTQCVKPNQAAKLSKQYLENVALKINVKVGGRNTVLYDAIERRIPLLTDVPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPQVTNYRGLISAQSHREEIIQDLYKTTEHPQRGIVHSGMIRELLLAFYRKNGSKPARIIFYRDGVSEGQFSQVLLYEMDAIRKACVSLESNYLPRVTFVVVQKRHHTRLFPTSNDQTDRSGNIMPGTVVDTTICHPREFDFYLNSHAGIQGTSRPSHYHVLFDENGFSADQLQSLTNNLCYTYARCTRSVSIVPPAYYAHLLAFRARYYLNEVDTSDSGSASGNRSTTNFVSTLPSIMENIKDVMFYC* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1642 971 MobiDBLite consensus disorder prediction 101 115 - -
Mtr4g1642 971 Pfam PAZ domain 355 459 IPR003100 GO:0005515
Mtr4g1642 971 CDD PAZ_argonaute_like 329 440 - -
Mtr4g1642 971 Pfam Argonaute linker 2 domain 468 514 IPR032472 -
Mtr4g1642 971 MobiDBLite consensus disorder prediction 15 31 - -
Mtr4g1642 971 Gene3D - 506 679 - -
Mtr4g1642 971 SMART DUF1785_2 277 329 IPR014811 -
Mtr4g1642 971 Pfam N-terminal domain of argonaute 129 268 IPR032474 -
Mtr4g1642 971 SUPERFAMILY PAZ domain 325 481 IPR036085 GO:0005515
Mtr4g1642 971 ProSiteProfiles PAZ domain profile. 330 442 IPR003100 GO:0005515
Mtr4g1642 971 MobiDBLite consensus disorder prediction 101 121 - -
Mtr4g1642 971 SUPERFAMILY Ribonuclease H-like 610 935 IPR012337 -
Mtr4g1642 971 Pfam Argonaute linker 1 domain 280 328 IPR014811 -
Mtr4g1642 971 Gene3D paz domain 324 446 - -
Mtr4g1642 971 CDD Piwi_ago-like 486 933 IPR045246 -
Mtr4g1642 971 PANTHER PROTEIN ARGONAUTE 1A 54 951 - -
Mtr4g1642 971 MobiDBLite consensus disorder prediction 42 81 - -
Mtr4g1642 971 Pfam Piwi domain 617 933 IPR003165 GO:0003676
Mtr4g1642 971 Coils Coil 587 607 - -
Mtr4g1642 971 MobiDBLite consensus disorder prediction 1 81 - -
Mtr4g1642 971 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 54 951 - -
Mtr4g1642 971 ProSiteProfiles Piwi domain profile. 616 934 IPR003165 GO:0003676
Mtr4g1642 971 Gene3D - 686 971 IPR036397 GO:0003676
Mtr4g1642 971 SMART Piwi_a_2 616 934 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1642 Mtr-Chr4 28749316 28755490 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1642 64 971 Eukaryotic Initiation Factors Gene Family AT1G48410 56.930 0.0 1047