Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1625 ATGGAGAAGGGTGGTGGGAAACCGAGAGGTCGTCCGAGGAAACGACGAAAGGAGGAGGAAGAGAAGGAGGGGAAATTGGTTAATGAAGCTAAGAGGCAAGTAGTTGAGACGAAACCGATTCCGTTGGTTGGGAGGTATGTGCTGAAAGAGTTTCCTAGAAATGGTGTTTTTCTAGGTAAAGTTGTGTATTACGAAAGTGGTTTATACAGGGTTAATTATGAAGACGGTGATTTTGAAGATTTAGAGAGTGTTGAAATTCGTCCGATACTTGTCAGGGACGATAGTTTTGATGGTAGTTTAGTTAAGAGAAGAAATAAGTTGGATAAATTAGTGTTGCAGAATAGTGCTAAGGTTGCAAATAAGTCTGATAAGGGTTCATTGAAATCTCAAAAAGATGAACATGAACCTGCTGCTGTTGGTGCAACTGATCCGTGTGAATCAAAGGGTGAAAATGATGAGGATGAAGACGACGAAGATGATGTGGATTTGTCGAGTGGCTCTGTTTCTAATGTTGAGACAGTGCCTTTGCCTCCGCCATTGCATTTGCCGCCATCGTCCGGAACTATCGGTGTGCCTGAGCCGAGTGTCTCACACCTCCTATCTGTATATGGGTTTTTGAGATCATTCAGCACCCGATTGTTTCTTCATCCATTTACTTTGGACGAATTTGTTGGTGCCCTGAATTATCGAGGACCAAACACTTTGTTTGACGCAATTCACATTTCTCTGATGCGGGTGTTGAGGCGTCATCTTGAAAGCCTGTCGTCTGAGGGGTTTGAGCTTGCATCACAATGTCTTAGGTGCAACGATTGGAGCTTGCTCGATACGTTGACTTGGTCTGGCTTTGTGATTCTCTATTTGGTGGTTAACGGGTACACAAAAGGACCTGAATGGAAAGGTTTTTATGATGAGGTTTTTAGCAGTGAGTATTATTTGTTGCCTGTAAGTAGGAAGTTAATGATTCTGCAAATTCTTTGTGATGATGTTTTGGAATCTGAGGAGCTAAAAACTGAAATGAACACGCGAAAGGAATCAGAGGTCGGGATGGATGATGATGCAGAAGATATCCTTCCTGCAGAAACTGGCCCCAGAAAAGTCTATCCAAGATATACCAGGACCTCTTTTTGTGAGGATAAAGAAGCTGTGAAGTTGGTTTCAGCATCAAATGCTGGGAACCAACCTGGTAACTCTGTTTCAAATTGCAGAGATACAGAAAGCACTGGGGATGGAGATGTTGATAGAAATGGAGATGAATGTCGCCTCTGCGGTATGGACGGAACCCTTATTTGTTGTGACGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGATGAAAATGTTTATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATTGATATGGCTGGGCCTACAATTGCAAAGGGAACCTCACTTAGAGGGGCTGAAGTATTTGGGAAGGATTTGTATGGGCAGCTCTTCATGGGTACATGCGACCACTTACTTGTGCTTAACTTTGAGAACAATGAAGTTTGTCTTAGATATTACAATCAGAAGGACATCCCTAAAGTTGTCCAAGTGCTTTATGAATCCATGCTGCATAGGCCAATGTACCATGATATTTGCATGGCAGTTTTACAATATTGGAATATTTCAGAAAACTTCTTACCTCTTTGTGCTTCAATTGAAACAAATTTAAAGGATGAGACAAAATCATCTGCCCTTTTATGTCCTCCTTCAAGTGAAGACAACCATACACCTGTTAGTTTGGTCAAGGTAGAGAACTCTCCAACCACTGCGAGTTTGATTCCCAATGATAATATGGTGCCTTCTCTTGATGCTTTGCAAGTTATTCCCCAAAGTCTTGCTTTTAATAGCAGTGGCATTGATAGAAGTGAAAAGGGCCTTACTGTAAATAAGAAGCTTTCTGAGGAAATTAAGACGGAGGCAATAATTTCAGCTGGTTCTGTTGGTCATCCATCCGACATGAACTTTCAGAATTCTGTCAATATGTCAACTGCAGTAGATGCTGCTAAGTACTCTGTGGCAAACAGTCAATCAAGTAATTGTGGCCATGCAAATGATATGGAGTTGCCTTCAAATTTTTCTTTGCAAAACAAAGAAAACACCCAAGTAGGTTTTGGAAAGTGTGAACGCACTGCAAGTGATGATTTTTGTTACATGGGTTTCTCCTTTAAACCCATGTCTTACATAAATTACTATATGCATGGTGAATTTTCTGCATCAGCAGCTGCCAAATTTGCATCTGATTCTTCAGAGGAGTCTAAGCCAGAGGGTCATGCGTCAGACAGCCAGAAGAAAACATTATCTGCATACACTTATTTGCAAGCAAAATCATTCTCCCAAGTAGCTTCACGTTTCTTTTGGCCCAGTTCTGAAAAGAAGCTTGTGGATGTTCCAAGAGAGAGGTGTGGTTGGTGTCTTTCCTGTAAAGCCAATGTTGTTAGCAAGAGAGGGTGCATGTTAAATCAGTCTCTTATAATTGCCACAAAAAGTGCTATGAAAACCCTTGCTATATTACCTCCTTTAAGGAATGGAGAGGGAATTCTTCCTAGTACCATTGCAACTTACATTTTATATATGGAGAGATGTTTGCATGGTTTAGTCGTTGGGCCCTTCGTAAATGCAAGCTATAGAGAGAACTGGCGTGAGCAAGTTAAACAAGCCACAACATTTAGTGCTATCAAGCCACTTCTACTTAAACTTGAGGAGAACATTCGAATCGTTGCTTTTTGTGGGGACTGGGTTAAGCTGACGGATGATCACTTAGTTGAATTTTCCAATATCAAAAGTGCCACATCTACTCAAGGAACAACTCAGAAACGTGCCCCAAGTGGGAGGCGTTCTAAAAAGAGGTCATCTAGTGATGAAGCTACAGATGATGGTTCCAAGGAAAGTATGTGGTGGCGTGGTGGAAGGTTTTCAAGACTTATATCTCAGAATATAACTGTGCCCAAATCCATGGTCCGAAAAGCAGCTCGCCAAGGTGGTTCGAGGAAAATTTCTGGTATTTTCTATGCTGATGACTCTGAAATTCCCAAAAGAAGTAGACAGCTTGTCTGGAGAGTTGCAGTTGAAATGAGTAGGAATGCCTCACAGCTGGCACTCCAGGTCAGATATCTAGATTTTTATCTTAGATGGAGTGATCTGATTCGTCCAGAGCAGAACACACAGGACGGGAAAGGCCAAGAGACCGAAGCTTCTGCTTTCCGAAATGCAAATATTTGTGACAAAAAACTTGTACAGGGAAAAATTTGTTACGGGATAATTTTTGGGAGCCAAAAGCATCTTCCTATTCGGGTGATGAAAAGTGCTGTTGAAACAGAGCAAGGGCCGGAAGGAAGAGAAAAGTATTGGTTTTTTGAAAATCGCATTCCTTTATATTTGGTAAAAGAGTATGAAGAAGGTAATGAAAAGGCTCCATGTGAAGAGCACTATAGTGGTACATATCAGTTGCACAGAAGGCAGTTGAAATGTTCCTGCAATGACATATTCTTTTACCTCATTTGCAAGAGAGACAACTTGGCATACTCGTGTTCTTCATGTCAGATGGGCATTTCAATTCGGTATGCTCACAAGTGCAATGCATGTCAAGGTTATTGTCACAAGGACTGTTCCATAAGTTCAGTCTCTAGACTCTCTACAAAAGGGGGAGTTGAATGCTTGACAACATGCAAACAATGTCACCATGCCAAGTTACTTGCTCCAAACATAACTAGTGATGAATCTCCAACAAGTCCCTTAATCTTACAAGGACAGGAAAACAGCTCTGGGACTAGTTTTAAGGGAGCAAGGCCAAAGACCAGTCATTCTGATATGAAACAAGTTAACTCCAAGTCAGTTTCGAAAGGATCAAAGCGTAAATGTCAGGATCAAACTTTGACTTCTGCCAGGAAAAAGAATGGTCATCCTGAGACAAAACTAGCCGAGTCTGATTCCACTTCGGCATCAATCAACCGTCGCAACAATAATTGTTCTTGGGGTGTTATTTGGAAAAAGAAAATGAACGAAGATAACTTTAATTTTGTGATCAAAAACATACTTTTCAAGGGAGCGTCAGACATACCTGATTCGGGACCTACTTGTCACTTGTGTGGAAAGGCATATAGGTCAGATCTAATGTATATTTGCTGCGAAGCATGCCAAAATTGGTTTCATGCTGAAGCTGTTGAACTTGAAGAGTCCCAAATTTCGGCCATGCTGGGTTTTAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGTGTGTCCTTACTCTGATTCAAAACCTAAGTCAGAAGTTAAGAAACCACGCAAAAGGGCTGTAAAGAAAGAACATTCTGGAGCCAATTCTGATTCTGGAACATTTAATGATATGAGGGAGTGTGAACCTGCTACTCCTGTCTATCCTGTGGGAAATGATCATTTAACTTACTCTCTTGAAAATTTTGAGCTGATCACAGAGCCTAATAAATTAGATTCGGATGTCGAGTGGAACACTGTTTCTGTGCCAGGGCCTCGGAAATTACAAGTGAGAAGGCATGTTAAGCATGAAGGGGATGACGATGGTTCTGTTGCAGGAATTCCTTTACAAGCTGAATTTCCAACATACAGTGAAGCAAGTTATCTGTCCAATCCAGCAGATTCAACATTACCTTTAGAATACGACCCTGCTGCTTTTGACAGCAATCTGATGATTGATTTTGAAGACAATAACAATACCATCTTCGATACAAATGAACTTCTGCGCTCAGATGATGACGGCCAGATTGGTGGAGTTGATTTGTCCGGGGAATTGTTGGAATATGATTTTGACAATTTTGACACCGCTAATCTTGAAGAATTTGGAGATGGTAGTTTTAGTTGTTGTGTATGTCTTCAAGGTGAACCAGGCCCTGATCTTTTTTGTGAGACTTGCGGGACTTTGATGCACAGCCATTGTTTGCCAACTTGGCATGAACCAGTTTCTGATCCGGAACATTGGAGGTGTCTGACTTGCCGGGAGTGGCAATAA 5001 0.4149 MEKGGGKPRGRPRKRRKEEEEKEGKLVNEAKRQVVETKPIPLVGRYVLKEFPRNGVFLGKVVYYESGLYRVNYEDGDFEDLESVEIRPILVRDDSFDGSLVKRRNKLDKLVLQNSAKVANKSDKGSLKSQKDEHEPAAVGATDPCESKGENDEDEDDEDDVDLSSGSVSNVETVPLPPPLHLPPSSGTIGVPEPSVSHLLSVYGFLRSFSTRLFLHPFTLDEFVGALNYRGPNTLFDAIHISLMRVLRRHLESLSSEGFELASQCLRCNDWSLLDTLTWSGFVILYLVVNGYTKGPEWKGFYDEVFSSEYYLLPVSRKLMILQILCDDVLESEELKTEMNTRKESEVGMDDDAEDILPAETGPRKVYPRYTRTSFCEDKEAVKLVSASNAGNQPGNSVSNCRDTESTGDGDVDRNGDECRLCGMDGTLICCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKIDMAGPTIAKGTSLRGAEVFGKDLYGQLFMGTCDHLLVLNFENNEVCLRYYNQKDIPKVVQVLYESMLHRPMYHDICMAVLQYWNISENFLPLCASIETNLKDETKSSALLCPPSSEDNHTPVSLVKVENSPTTASLIPNDNMVPSLDALQVIPQSLAFNSSGIDRSEKGLTVNKKLSEEIKTEAIISAGSVGHPSDMNFQNSVNMSTAVDAAKYSVANSQSSNCGHANDMELPSNFSLQNKENTQVGFGKCERTASDDFCYMGFSFKPMSYINYYMHGEFSASAAAKFASDSSEESKPEGHASDSQKKTLSAYTYLQAKSFSQVASRFFWPSSEKKLVDVPRERCGWCLSCKANVVSKRGCMLNQSLIIATKSAMKTLAILPPLRNGEGILPSTIATYILYMERCLHGLVVGPFVNASYRENWREQVKQATTFSAIKPLLLKLEENIRIVAFCGDWVKLTDDHLVEFSNIKSATSTQGTTQKRAPSGRRSKKRSSSDEATDDGSKESMWWRGGRFSRLISQNITVPKSMVRKAARQGGSRKISGIFYADDSEIPKRSRQLVWRVAVEMSRNASQLALQVRYLDFYLRWSDLIRPEQNTQDGKGQETEASAFRNANICDKKLVQGKICYGIIFGSQKHLPIRVMKSAVETEQGPEGREKYWFFENRIPLYLVKEYEEGNEKAPCEEHYSGTYQLHRRQLKCSCNDIFFYLICKRDNLAYSCSSCQMGISIRYAHKCNACQGYCHKDCSISSVSRLSTKGGVECLTTCKQCHHAKLLAPNITSDESPTSPLILQGQENSSGTSFKGARPKTSHSDMKQVNSKSVSKGSKRKCQDQTLTSARKKNGHPETKLAESDSTSASINRRNNNCSWGVIWKKKMNEDNFNFVIKNILFKGASDIPDSGPTCHLCGKAYRSDLMYICCEACQNWFHAEAVELEESQISAMLGFKCCKCRRIKSPVCPYSDSKPKSEVKKPRKRAVKKEHSGANSDSGTFNDMRECEPATPVYPVGNDHLTYSLENFELITEPNKLDSDVEWNTVSVPGPRKLQVRRHVKHEGDDDGSVAGIPLQAEFPTYSEASYLSNPADSTLPLEYDPAAFDSNLMIDFEDNNNTIFDTNELLRSDDDGQIGGVDLSGELLEYDFDNFDTANLEEFGDGSFSCCVCLQGEPGPDLFCETCGTLMHSHCLPTWHEPVSDPEHWRCLTCREWQ* 1667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1625 1666 MobiDBLite consensus disorder prediction 121 187 - -
Mtr4g1625 1666 ProSiteProfiles DDT domain profile. 193 253 IPR018501 -
Mtr4g1625 1666 MobiDBLite consensus disorder prediction 937 970 - -
Mtr4g1625 1666 Pfam DDT domain 195 250 IPR018501 -
Mtr4g1625 1666 SMART testlast3 193 253 IPR018501 -
Mtr4g1625 1666 PANTHER PHD FINGER FAMILY PROTEIN 2 1660 - -
Mtr4g1625 1666 MobiDBLite consensus disorder prediction 1295 1310 - -
Mtr4g1625 1666 MobiDBLite consensus disorder prediction 1421 1454 - -
Mtr4g1625 1666 MobiDBLite consensus disorder prediction 387 405 - -
Mtr4g1625 1666 MobiDBLite consensus disorder prediction 387 410 - -
Mtr4g1625 1666 SUPERFAMILY FYVE/PHD zinc finger 1357 1418 IPR011011 -
Mtr4g1625 1666 SUPERFAMILY FYVE/PHD zinc finger 1612 1664 IPR011011 -
Mtr4g1625 1666 MobiDBLite consensus disorder prediction 124 139 - -
Mtr4g1625 1666 MobiDBLite consensus disorder prediction 148 163 - -
Mtr4g1625 1666 MobiDBLite consensus disorder prediction 1 27 - -
Mtr4g1625 1666 MobiDBLite consensus disorder prediction 1242 1294 - -
Mtr4g1625 1666 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 2 1660 - -
Mtr4g1625 1666 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 308 340 IPR028942 -
Mtr4g1625 1666 MobiDBLite consensus disorder prediction 952 970 - -
Mtr4g1625 1666 Pfam PHD-finger 419 461 IPR019787 -
Mtr4g1625 1666 SMART PHD_3 418 461 IPR001965 -
Mtr4g1625 1666 SMART PHD_3 1364 1412 IPR001965 -
Mtr4g1625 1666 SMART PHD_3 1617 1663 IPR001965 -
Mtr4g1625 1666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1359 1418 IPR013083 -
Mtr4g1625 1666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 465 IPR013083 -
Mtr4g1625 1666 SUPERFAMILY FYVE/PHD zinc finger 407 466 IPR011011 -
Mtr4g1625 1666 ProSitePatterns Zinc finger PHD-type signature. 419 460 IPR019786 -
Mtr4g1625 1666 MobiDBLite consensus disorder prediction 1242 1321 - -
Mtr4g1625 1666 ProSiteProfiles Zinc finger PHD-type profile. 416 463 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1625 Mtr-Chr4 28451589 28462754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1625 283 567 EF-hand Containing Proteins AT5G22760 47.586 8.94e-76 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Mtr4g1625 DDT 4.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1625 - - mtr:MTR_4g055920 2733.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1625 4 28451589 28462754 Mtr4g1625 4 28451589 28462754 ECH