Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1623 ATGGAGGATCAAAACCTAAACCTACCTTATACTCTTTCACCATCTTCAACCCAAAATGAGTCAGAAACAACCAACAATGCTGCCATCGTGACGGAAGTGTTGGGAAATGATGCTGGTTCGGACACTGGAGCAAAGTCCAAATCTGTAGGTTCGGAATCTGCTCCGGTAAAAAGGGGCAGAGGGAGGCCTCGAAAGTATGAGGTTGGCGGGAAGCCATTGTCTCCGGTGACACCGACTCCAGGGCTTGCTATTCAGCCTTGTGGAAGTGAGGAGAAGCGTGGAAGGGGACGTCCTCGTGGTTCTGGAAAATTGCAAATTTTGGCTTCCATTGGTGAATGTGCTGGAGAAACGGCTGGAGGAAGCATGTCACCTCATGTGCTGAGTGTGAACCCTGGAGAGGATGTGGTTGGAAAGATATTTGCATTTTATCAAAATGGTCCTTCTTCAGCTGTTTGCATTCTTTCTGCTTCTGGCACCGTATCAACTGTCACCCTTCGTCAACCTGGTGTTTCTGATGGTTTTTTGACATACGAGGGTCACTTTGAGATTTTATCTTTAAATGGATCATGCACCTTCACTAGTGGTGCTGTTGGTGGTGCACAAAGGAAAATTTGCATGTTGAGTGTTTCATTGGCTAAACCTAATGGAGAGGTTTTTGGAGGTGGTGTTGAGAACACATTGATAGCCGCTTCTCCTACTCAACTTATTTTGGTAACTTTCAAGCAAACCATAAGCAATCAAATCAAGAGAAAGCACTCATCACTACCTTCAACTGCTCCAAATATGTTGACTAATCAAGATTCAGCGAAAGAAAACACCTCGAAAGTTCCCAAGTTAACAACAGAAGGAGAACCTAGCTGCCTAACTGCAACAACAACAAATACTAATGGTGCAATAGTAGAAGATAATGTCACTATTGCTGCGGATGAAAATGTTCAATCCGATTCTATTCGTTGTAAATGTATCGATCTTGAAAGCCAGACACCGGAGCCTGTTAAAAGATCTCCAGATATTAATGCCAACCATGTTCCTGAGATATGA 1041 0.438 MEDQNLNLPYTLSPSSTQNESETTNNAAIVTEVLGNDAGSDTGAKSKSVGSESAPVKRGRGRPRKYEVGGKPLSPVTPTPGLAIQPCGSEEKRGRGRPRGSGKLQILASIGECAGETAGGSMSPHVLSVNPGEDVVGKIFAFYQNGPSSAVCILSASGTVSTVTLRQPGVSDGFLTYEGHFEILSLNGSCTFTSGAVGGAQRKICMLSVSLAKPNGEVFGGGVENTLIAASPTQLILVTFKQTISNQIKRKHSSLPSTAPNMLTNQDSAKENTSKVPKLTTEGEPSCLTATTTNTNGAIVEDNVTIAADENVQSDSIRCKCIDLESQTPEPVKRSPDINANHVPEI* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1623 346 Pfam AT hook motif 92 102 IPR017956 GO:0003677
Mtr4g1623 346 Pfam AT hook motif 57 68 IPR017956 GO:0003677
Mtr4g1623 346 CDD DUF296 124 240 IPR005175 -
Mtr4g1623 346 ProSiteProfiles PPC domain profile profile. 119 261 IPR005175 -
Mtr4g1623 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 124 241 IPR005175 -
Mtr4g1623 346 MobiDBLite consensus disorder prediction 1 101 - -
Mtr4g1623 346 ProSitePatterns HMG-I and HMG-Y DNA-binding domain (A+T-hook). 54 65 IPR000637 GO:0006355
Mtr4g1623 346 MobiDBLite consensus disorder prediction 251 290 - -
Mtr4g1623 346 PRINTS AT-hook-like domain signature 57 67 IPR017956 GO:0003677
Mtr4g1623 346 PRINTS AT-hook-like domain signature 90 101 IPR017956 GO:0003677
Mtr4g1623 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 120 250 - -
Mtr4g1623 346 PANTHER DUF296 DOMAIN PROTEIN 1 344 - -
Mtr4g1623 346 MobiDBLite consensus disorder prediction 1 31 - -
Mtr4g1623 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 344 IPR039605 GO:0003680
Mtr4g1623 346 Gene3D - 124 263 - -
Mtr4g1623 346 SMART AT_hook_2 57 69 IPR017956 GO:0003677
Mtr4g1623 346 SMART AT_hook_2 92 104 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1623 Mtr-Chr4 28427290 28432270 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1623 55 240 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 48.387 2.63e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1623 - - mtr:MTR_4g055833 678.707