Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1622 ATGGAGGATCAAAACCGAAACCTACCTTATACTCTTTCACAGTCTTCAACCCCAAACGAGTTAGAAACAACCAACATTGCTGCCAACGTGATGGAAGTTGTGGGAAATGATGCTGGTTCGGACACTGGAGCAAAGTCCAAATCTGTAGGTTCAGAATCTGCTCCGGTAAAAAGGGGCAGAGGGAGGCCTCGAAAGTATGAGGTTGGCGGGAAGCCATTGTCTCCGGCAACACCGACACCAGGGCTTGCCATTCAGCCTTATGGAAGTGATGAGAAGCGTGGAAGGGGACGTCCTCGTGGTTCTGGAAAATTGCAAATTTTGGCTTCCATTGGTGGATGTGTTGGAGAAACGGCTCGAGGAAGCATGTCACCTCATGTGCTGATTGTGAAACCTGGAGAGGATGTCGTTGGAAAGATATTTGCATTTTATCAAAAAGGTCCTTCTTCAGCTGTTTGCATTCTTTCTGCTACTGGCACTATATCAAGTGTTACCATTCGCCAACCTAGTGCTTCTGATGGTTTTTTGACATACGAGGGTCACTTTGAGATTTTATCTTTAAGTGGATCATGCACCTTCACTACTGGTGCACAAAGGAAAATTGGCATGTTGAGTGTTTCATTGGCTAAACCTAATGGAGAGGTTTTTGGAGGTGGTGTTGAGAACACATTGATAGCTGCTACTCCCACTCAACTTATTTTGGCAACTTTCAAGCAAACCATAAGCAATCAAATAAAGAGAAAGGACTCATCACTACCTTCAACTGCTGCTAATATGCTGACTAATCAAGATTCAGCGAAAGAAAATAACTCGAAAGTTCCTAAGTTAACAACAGAAGGAGGACCTAGCTGCCTAACTCCAACAACAACAAATACTAATGGTGTAATAGTAGAAGATAATGTCACTATTGTTGCTGATGAAAATGTTCAATCCGATTCTATTGTTATCGATCTTGATAGCCAGACACCGGAGCCTGTTAAAGGAGAACCTAGCTGTCTAACTGCAACAACAACAGATACTAATGGTGTCATAGTGGAAGATAATGTCACTATTGTTGCTGATGAAAATGTTCAATCGGCCGATTCTATTGTTATCGATCTTGATATCCAGATACCGGAGCCTGTTAAAATATCTCCAGATTTTGATGCCAACCATGTCCCTGAAGAATGA 1167 0.4259 MEDQNRNLPYTLSQSSTPNELETTNIAANVMEVVGNDAGSDTGAKSKSVGSESAPVKRGRGRPRKYEVGGKPLSPATPTPGLAIQPYGSDEKRGRGRPRGSGKLQILASIGGCVGETARGSMSPHVLIVKPGEDVVGKIFAFYQKGPSSAVCILSATGTISSVTIRQPSASDGFLTYEGHFEILSLSGSCTFTTGAQRKIGMLSVSLAKPNGEVFGGGVENTLIAATPTQLILATFKQTISNQIKRKDSSLPSTAANMLTNQDSAKENNSKVPKLTTEGGPSCLTPTTTNTNGVIVEDNVTIVADENVQSDSIVIDLDSQTPEPVKGEPSCLTATTTDTNGVIVEDNVTIVADENVQSADSIVIDLDIQIPEPVKISPDFDANHVPEE* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1622 388 PRINTS AT-hook-like domain signature 57 67 IPR017956 GO:0003677
Mtr4g1622 388 PRINTS AT-hook-like domain signature 90 101 IPR017956 GO:0003677
Mtr4g1622 388 MobiDBLite consensus disorder prediction 1 30 - -
Mtr4g1622 388 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 310 IPR039605 GO:0003680
Mtr4g1622 388 MobiDBLite consensus disorder prediction 1 101 - -
Mtr4g1622 388 Gene3D - 124 261 - -
Mtr4g1622 388 ProSitePatterns HMG-I and HMG-Y DNA-binding domain (A+T-hook). 54 65 IPR000637 GO:0006355
Mtr4g1622 388 Pfam Plants and Prokaryotes Conserved (PCC) domain 124 237 IPR005175 -
Mtr4g1622 388 ProSiteProfiles PPC domain profile profile. 119 262 IPR005175 -
Mtr4g1622 388 PANTHER DUF296 DOMAIN PROTEIN 1 310 - -
Mtr4g1622 388 MobiDBLite consensus disorder prediction 260 289 - -
Mtr4g1622 388 SUPERFAMILY AF0104/ALDC/Ptd012-like 120 248 - -
Mtr4g1622 388 CDD DUF296 124 236 IPR005175 -
Mtr4g1622 388 SMART AT_hook_2 57 69 IPR017956 GO:0003677
Mtr4g1622 388 SMART AT_hook_2 92 104 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1622 Mtr-Chr4 28414879 28419843 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1622 55 236 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 48.370 5.86e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1622 - - mtr:MTR_4g055803 647.121