Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1620 ATGGAGGACAATGTGAACCTAGAACTTACACTCTCACTTAATTCATCCCAAGACAGGTCAAAAACCACCAACCATGCCATCACCGAGATGGAAGCTGATAGAGTTGATGCTGGTTTGGACACCGTAGTAAAGTCTGAAATCGGAGGTTCAAACTCTGCTTTGGTGAAAAGGGGGAGAGGAAGGCCTCGAAAGTCTGAGGTTGATAGGAATCGACTGTCTCCTACCAAGTTGCCACCGAGGACTTCCAATCAGCCTAGTGGAAGTGAGGAGAAGCGTGGAAGGGGACGTCCTCGTGGTTCTGGAAAACTGCAGAGTTTGGCTCCCATTGAAACAGATGGAGGAAACATGACACCTTATATGCTGATTGTGAACCCTAGAGAGGATGTGGTTAGAAAGTTATTTGCATTTATGGAGAAAGTTCCTCAAGAAAATGTTTGCATACTTTCTGCTTGTGGAACTGTATCAAGTCTCACCCTTTGTGAACCTGATGTTTCTAATGGTTTTTCAAGACATGAGGGTCACTTTGACATCTTATCTTTAAGTGGACCATGCACCATTACTGGTGGTGCTGCTGGTGGTTCACAAAGGAAAATTGGCATGTTGAGTGTTTCATTGGCTCAACCTGATGGCAAGGTTTTTGGAGGTCGTGTTGACAACTTATTGATAGCTGCTACTACTGTTAAGATAATTTTGGCAACTTGCAAGAAAAACATAAAGAAGAGAATGTATGCATCTACATCTTCAGCTGCTCCAAACATGGCGACTAATCAAGAAGCAATAAGGGATAATAACTCGAAAGGTCCTAAGTTAACTATTGAAGGAGAACCTAGCTGCCCACAACATTCCTAA 849 0.4323 MEDNVNLELTLSLNSSQDRSKTTNHAITEMEADRVDAGLDTVVKSEIGGSNSALVKRGRGRPRKSEVDRNRLSPTKLPPRTSNQPSGSEEKRGRGRPRGSGKLQSLAPIETDGGNMTPYMLIVNPREDVVRKLFAFMEKVPQENVCILSACGTVSSLTLCEPDVSNGFSRHEGHFDILSLSGPCTITGGAAGGSQRKIGMLSVSLAQPDGKVFGGRVDNLLIAATTVKIILATCKKNIKKRMYASTSSAAPNMATNQEAIRDNNSKGPKLTIEGEPSCPQHS* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1620 282 Gene3D - 118 254 - -
Mtr4g1620 282 MobiDBLite consensus disorder prediction 24 40 - -
Mtr4g1620 282 Pfam Plants and Prokaryotes Conserved (PCC) domain 118 234 IPR005175 -
Mtr4g1620 282 MobiDBLite consensus disorder prediction 246 282 - -
Mtr4g1620 282 SUPERFAMILY AF0104/ALDC/Ptd012-like 114 245 - -
Mtr4g1620 282 PRINTS AT-hook-like domain signature 56 66 IPR017956 GO:0003677
Mtr4g1620 282 PRINTS AT-hook-like domain signature 77 88 IPR017956 GO:0003677
Mtr4g1620 282 PRINTS AT-hook-like domain signature 93 103 IPR017956 GO:0003677
Mtr4g1620 282 PANTHER DUF296 DOMAIN PROTEIN 7 279 - -
Mtr4g1620 282 MobiDBLite consensus disorder prediction 1 23 - -
Mtr4g1620 282 MobiDBLite consensus disorder prediction 1 110 - -
Mtr4g1620 282 MobiDBLite consensus disorder prediction 246 264 - -
Mtr4g1620 282 MobiDBLite consensus disorder prediction 59 73 - -
Mtr4g1620 282 Pfam AT hook motif 91 101 IPR017956 GO:0003677
Mtr4g1620 282 Pfam AT hook motif 56 67 IPR017956 GO:0003677
Mtr4g1620 282 ProSiteProfiles PPC domain profile profile. 113 256 IPR005175 -
Mtr4g1620 282 SMART AT_hook_2 56 68 IPR017956 GO:0003677
Mtr4g1620 282 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Mtr4g1620 282 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 7 279 IPR039605 GO:0003680
Mtr4g1620 282 CDD DUF296 117 234 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1620 Mtr-Chr4 28386833 28390608 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1620 49 251 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 36.017 5.05e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1620 - - mtr:MTR_4g055705 533.102