Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1618 ATGGCCGACGCTTTGCTTGGAGTTGTGTCTGAAAATTTGACGTCTCTCCTTCAAAATGAATTTGCAACCATTTCTGGAATCAGGTCAAAGGCTCGAAAGCTATCAGACAACTTAGTTCACATCAAGGCTGTTCTTGAAGATGCTGAGAAGAAACAATTCAAAGAACTCTCTATTAAGCAATGGTTACAAGACCTCAAAGATGCTGTTTATGTGCTCGGTGATATCCTTGATGAGTACTCGATCGAGTCTGGTCGACTGAGAGGATTTAACTCTTTCAAACCAATGAACATCGCGTTTCGCCATGAGATCGGTAGCAGGTTTAAAGAGATTACAAGGAGGTTAGATGATATTGCTGAAAGTAAGAACAAGTTTTCTCTACAGATGGGTGGAACTCTTAGGGAAATCCCAGATCAAGTAGCTGAAGGGCGCCAAACCAGCTCCACCCCTCTTGAATCAAAAGCATTGGGAAGAGACGATGATAAAAAAAAGATTGTCGAGTTTCTTCTCACCCATGCGAAGGACTCTGACTTCATTTCTGTCTATCCCATTGTTGGTTTAGGTGGTATTGGAAAAACAACTCTTGTTCAATTAGTCTACAATGATGATCGCGTGAGTGGCAATTTTGATAAAAGAATTTGGGTTTGTGTTTCTGAGACTTTCTCCTTCGAGAGGATTTTGCGTTCTATTATAGAATCTATCACATTAGAGAAGTGTCCTGACTTTGACTTAGACGTATTGGAAAGAAAGGTGCAAGGATTGTTGCAAGGGAAAATATATTTGTTGATTTTAGATGATGTGTGGAATCAAAATGATCAATTGGAATCTGGGTTAACACCCGATATATGGACTCGTTTGAAATCTGTTTTGTCATGTGGATCAAAAGGTAGTTCCATTTTAGTGTCAACTCGTGATAAGGATGTTGCAACAATCATGGGAACATGCCAAGCTCACTCTTTGTCTGGTCTCTCTTACAGTGATTGTTGGTTGTTGTTCAAACAACATGCATTTAGACATTACAGAGAAGAGCATACAAAGCTTGTGGAAATAGGAAAGGAGATAGTAAAGAAATGTAATGGATTGCCTCTTGCAGCAAAAGCATTGGGAGGTTTAATGGTCTCAATGAATGAAGAAAAGGAATGGCGTGATATTAAAGACAATGACCTTTGGGCTTTACCACAAGAAAAATCTATTTTGCCTGCTTTGAGGCTGAGTTACTTTTATTTAACACCAACTCTAAAGCAATGTTTCTCTTTTTGTGCTATATTTCCTAAGGATAGAGAAATCTTGAAAGAAGAATTGATTCAGCTTTGGATGGCTAATGGATTAATTTCATCTATGGGTAATTTGGACGTTGAAGATGTTGGAAACATGGTTTGGAAGGAATTGTACCAAAAATCATTCTTTCAAGAAATCAAAATAGATGAATATTCTAGAGATATTTATTTCAAGATGCATGATCTTGTTTATGATCTCCTTCATTCAGTAGTGGGGAAAGAATGTATGTATTTGGAGGATAAAAACGTTACTAATTTGTCACGAAGCACACACCACATTGGTTTTGACTACACAGACTTGTTATCCATCAACAAGGGTGCCTTCAAAGAAGTTGAATCCTTGCGAACATTGTTTCAGTTGAGTGATTATCATCATTATTCCAAAATAGATCATGATTACATCCCAACAAACCTTTCTCTTCGGGTTTTGCGCACATCCTTTACCCATGTGCGATCACTAGAGAGTTTAATTCATTTAAGGTATTTGGAGCTTCGTAATCTTGTCATAAAAGAGTTGCCTGACTCAATTTACAACTTGCAAAAATTGGAAACCTTGAAAATAATACGCTGTGATAATCTGAGTTGTCTTCCGAAACACTTGGCCTGCCTACAAAATCTTAGACATATAGTCATTGAAGATTGTTGGTCTTTGTCTCGAATGTTTCCTAGCATTGGAAAATTATCTTGTCTAAGAACATTAAGTGTGTACATTGTTAGTTTAAAGAAAGGGAATAGCTTGACAGAGTTACGTGATCTAAAACTTGGTGGAAAACTGAGTATCAAAGGCTTAAAAGATGTTGGCAGTATATCTGAAGCTCAAGAAGCCAATTTGATGGGTAAAAAAGACCTTCATGAATTATGCTTGTCTTGGGAAAGCAATGATAAATTTACCAAGCCACCAACTGTAAGTGCTGAGAAAGTACTCGAAGTGCTTCAACCTCAGTCAAATCTCAAGTGCTTGGAAATAAATTGCTATGATGGATTGTGGTTACCAAGTTGGATAATTATTCTTAGTAATTTAGTTTCTTTTGAACTTGAGAATTGCAACGAAATTGTGCAGCTTCCGTTAATTGGTAAACTACCATCTCTAAAAAAACTGACAATATCTGGTATGTATAATCTGAAATACTTGGATGATGATGAATCTCGGGATGGTAGGGAGGTGAGGGTTTTCCCATCTCTGGAGGTACTCGACTTATTTTGTCTACAAAACATAGAGGGGTTATTGAAAGTGGAAAGAGGGGAGATGTTTCCTTGTCTTTCTAAGTTGAAAATCTCCAAATGCCCTAAACTTGGAATGCCATGTCTTCCATCTCTTAAATCCCTCGATGTCGATCCATGTAACAATGAGTTACTGAGATCAATCTCTACTTTCCGTGGTCTTACTCAGCTTTCCCTACTTGACAGTGAAGAAATAATAACATCCTTCCCAGATGGGATGTTCAAAAACCTTACTTCTCTTCAATCTTTGGTTTTAAATTATTTCACAAATCTAAAGGAGTTACCAAATGAACCCTTTAACCCAGCTTTGAAACATCTGGATATCTCTCGTTGTCGTGAGTTGGAGTCCTTACCAGAGCAAATTTGGGAAGGTCTTCAATCCCTTCGAACTCTAGGAATTAGTTATTGTAAAGGATTGCAATGCTTGCCGGAGGGTATTCAACACCTCACTTTCCTTAGGACTCTAAAGATTTGGGGTTGTGAAGGATTGCAATGCTTGCCAGAAGGCATTCAACACCTCACTTCTCTTGAGCTTCTGACTATCGGTTATTGCCCCACATTAAAGTTACGATGCAAAGAGGGAACAGGGGAGGATTGGGACAAGATAGCTCATATTCCAAAAAGAGATATTCGTGAGTTTTGA 3138 0.3802 MADALLGVVSENLTSLLQNEFATISGIRSKARKLSDNLVHIKAVLEDAEKKQFKELSIKQWLQDLKDAVYVLGDILDEYSIESGRLRGFNSFKPMNIAFRHEIGSRFKEITRRLDDIAESKNKFSLQMGGTLREIPDQVAEGRQTSSTPLESKALGRDDDKKKIVEFLLTHAKDSDFISVYPIVGLGGIGKTTLVQLVYNDDRVSGNFDKRIWVCVSETFSFERILRSIIESITLEKCPDFDLDVLERKVQGLLQGKIYLLILDDVWNQNDQLESGLTPDIWTRLKSVLSCGSKGSSILVSTRDKDVATIMGTCQAHSLSGLSYSDCWLLFKQHAFRHYREEHTKLVEIGKEIVKKCNGLPLAAKALGGLMVSMNEEKEWRDIKDNDLWALPQEKSILPALRLSYFYLTPTLKQCFSFCAIFPKDREILKEELIQLWMANGLISSMGNLDVEDVGNMVWKELYQKSFFQEIKIDEYSRDIYFKMHDLVYDLLHSVVGKECMYLEDKNVTNLSRSTHHIGFDYTDLLSINKGAFKEVESLRTLFQLSDYHHYSKIDHDYIPTNLSLRVLRTSFTHVRSLESLIHLRYLELRNLVIKELPDSIYNLQKLETLKIIRCDNLSCLPKHLACLQNLRHIVIEDCWSLSRMFPSIGKLSCLRTLSVYIVSLKKGNSLTELRDLKLGGKLSIKGLKDVGSISEAQEANLMGKKDLHELCLSWESNDKFTKPPTVSAEKVLEVLQPQSNLKCLEINCYDGLWLPSWIIILSNLVSFELENCNEIVQLPLIGKLPSLKKLTISGMYNLKYLDDDESRDGREVRVFPSLEVLDLFCLQNIEGLLKVERGEMFPCLSKLKISKCPKLGMPCLPSLKSLDVDPCNNELLRSISTFRGLTQLSLLDSEEIITSFPDGMFKNLTSLQSLVLNYFTNLKELPNEPFNPALKHLDISRCRELESLPEQIWEGLQSLRTLGISYCKGLQCLPEGIQHLTFLRTLKIWGCEGLQCLPEGIQHLTSLELLTIGYCPTLKLRCKEGTGEDWDKIAHIPKRDIREF* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1618 1045 Pfam Rx N-terminal domain 6 92 IPR041118 -
Mtr4g1618 1045 Gene3D - 322 403 IPR042197 -
Mtr4g1618 1045 Pfam NB-ARC domain 158 385 IPR002182 GO:0043531
Mtr4g1618 1045 SUPERFAMILY RNI-like 815 1017 - -
Mtr4g1618 1045 PRINTS Disease resistance protein signature 180 195 - -
Mtr4g1618 1045 PRINTS Disease resistance protein signature 253 267 - -
Mtr4g1618 1045 PRINTS Disease resistance protein signature 357 371 - -
Mtr4g1618 1045 PRINTS Disease resistance protein signature 955 971 - -
Mtr4g1618 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 419 IPR027417 -
Mtr4g1618 1045 Gene3D - 404 495 IPR036388 -
Mtr4g1618 1045 PANTHER OS05G0414200 PROTEIN 29 997 - -
Mtr4g1618 1045 Gene3D Ribonuclease Inhibitor 497 859 IPR032675 -
Mtr4g1618 1045 Coils Coil 31 51 - -
Mtr4g1618 1045 Gene3D Ribonuclease Inhibitor 860 1026 IPR032675 -
Mtr4g1618 1045 Gene3D - 6 118 - -
Mtr4g1618 1045 PANTHER DISEASE RESISTANCE PROTEIN RP 29 997 IPR044974 GO:0006952
Mtr4g1618 1045 SUPERFAMILY L domain-like 483 856 - -
Mtr4g1618 1045 Gene3D - 137 316 IPR027417 -
Mtr4g1618 1045 CDD RX-CC_like 6 119 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1618 Mtr-Chr4 28334441 28342702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1618 183 795 WRKY Transcription Factor Family AT5G45050 23.617 3.42e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1618 - - mtr:MTR_5g071670 1427.54