Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1613 ATGGCTATTGTAAATGAAGAAAATGTTCAACAAGAATTTAATCCACCGAAGAAGAAACCACCTACTGAGGATGAGAAGAGGAAGAAGAAAATTGTAGCTGGGAGTTTGATGAAAGCTTTGATTAGACCTGGTGGTGGTGATTCTCATCCTTCAGATGCTGACCAGGTTATCTATCATTCCACAATTCGAACTTTGGATGGAGTTGTTGTGGAATCTACCCGATCCGATCATGGAGGCAAGGGAACACCAATAAGACATGTATTGGGTAAAAGCAAGATGCTATTGGGCTTGCTAGAAGGAATTCCAACGATGTTTAAGGGTGAAGTGGCAATGTTCAAGATGAAGCCTCAGCTGCATTATGGTGAGGATGATTGTCCTGTTTCTGCTCCTGATGGTTTTCCTAAGGATGATGAACTCCATTTTGAAATTGAACTGATAGAGTTTTTCAAGGCCAAGGTTATCACTGATGATTTGGAAGTGGTTAAAAAGGTTGTACGTGAAGGGGAGGGTTGGGAATCTCCAAGAGAACCTTATGAAGTGAAGGCTTGGATTTCAGCAAAGACAGTTACTGGGAAATTGATCATGTCACACACAGAAGGAGAACCATACTTCTTCACATTTGGAAAATCAGAGGTACCTAAAGGTCTTGAAATGGGGATCGGAACAATGGTTCGAGAAGAAAAAGCTGTTATATATGTTACAAGTCAGTATTTAACTGAGTCTCCTCTGATGCCTGTTATAGAAGATTCTGAAGTCCAGTTTGAAGTGGAGCTTGTTCATTTTGTTCAAGTGAGGGACGTGCTTGGAGATGGACGCCTAATAAAACGTCGGATTCGTGATGGAAAAGGTGATTTTCCAATGGATTGCCCCCTCCATGACAGTCTACTTCATGTTCATTACAAGGGTACTGTTCTCAATGAAGAAAATAGGGTTTTCTATGACACGAGAGTTGATAACGATGGCCAACCATTGGATTTCTGTTCTGGAGAAGGACTTGTACCAGAGGGATTTGAATTGTGTGTTCGTCTGATGCTACCTGGAGAGATGGCTCTTGTCACATGTCCGCCAGACTATGCTTATGATAAGTTTCCAAGGCCTTCAAATGTTCCCGAGGGTGCTCATATTCAATGGGAAATCGAGCTTCTATCTTTTGAAATGCCAAAGGACTGGACAGGAATGGACTTTAAAAGTATAATGAACGAAGCTGAAAATATCAGAAACACGGGTAACAGGTTGTTTAAAGAAGGAAAATATGAACTTGCAAAGGCAAAGTATGAAAAGGTGCTTCGAGAATTTAATCATGTTAATCCTCAAGACGACGAGGAAGGAAAAATATTTTCAGATACACGTAATTTGCTACACCTGAATGTTGCTGCATGCTATCTAAAGTTGGGAGAATGCAGAAAGTCCATTGAGACATGTAATAAGGTTTTAGAAGCAAATCCTGCGCACGTTAAGGGTCTTTATCGTCGTGGAATGGCCTACATGGGCAATGGAGATTTTGAAGAAGCAAGGGCTGATTTCAAAATGATGATCAAAGTCGACAAGTCAACTGAATCAGATGCAACTGCAGCTCTTCTAAAACTGAAGCAGAAAGAGCAGGAAGTTGAGAAGAAAGCTCGGAAACAGTTTAAAGGGCTATTTGACAAGAAACCTGGAGAAATTGCAGAAGTTAAAGCTAATGACGATGAAAATCAAGTCACAAGTGAAATCCAGAAAGATGGTGAGGTACATGAACAAGACTCATCAGATGGAACGAATTCGGAGGATTCACATGAAGCTGCACCTGACGCAGATCAAAGGGGTTGGTTTGCTCACTTTTGGCCTAACGGTAGTAGAATTTTTTCGTCTCTTGGGCTTCATAGATGTACCATACTATAA 1881 0.4099 MAIVNEENVQQEFNPPKKKPPTEDEKRKKKIVAGSLMKALIRPGGGDSHPSDADQVIYHSTIRTLDGVVVESTRSDHGGKGTPIRHVLGKSKMLLGLLEGIPTMFKGEVAMFKMKPQLHYGEDDCPVSAPDGFPKDDELHFEIELIEFFKAKVITDDLEVVKKVVREGEGWESPREPYEVKAWISAKTVTGKLIMSHTEGEPYFFTFGKSEVPKGLEMGIGTMVREEKAVIYVTSQYLTESPLMPVIEDSEVQFEVELVHFVQVRDVLGDGRLIKRRIRDGKGDFPMDCPLHDSLLHVHYKGTVLNEENRVFYDTRVDNDGQPLDFCSGEGLVPEGFELCVRLMLPGEMALVTCPPDYAYDKFPRPSNVPEGAHIQWEIELLSFEMPKDWTGMDFKSIMNEAENIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKIFSDTRNLLHLNVAACYLKLGECRKSIETCNKVLEANPAHVKGLYRRGMAYMGNGDFEEARADFKMMIKVDKSTESDATAALLKLKQKEQEVEKKARKQFKGLFDKKPGEIAEVKANDDENQVTSEIQKDGEVHEQDSSDGTNSEDSHEAAPDADQRGWFAHFWPNGSRIFSSLGLHRCTIL* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1613 626 SUPERFAMILY TPR-like 399 540 IPR011990 GO:0005515
Mtr4g1613 626 MobiDBLite consensus disorder prediction 561 598 - -
Mtr4g1613 626 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PASTICCINO1 70 578 IPR031135 GO:0030154|GO:0042761|GO:0099402
Mtr4g1613 626 Pfam Tetratricopeptide repeat 486 513 IPR019734 GO:0005515
Mtr4g1613 626 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 48 146 IPR001179 GO:0003755
Mtr4g1613 626 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 176 259 IPR001179 GO:0003755
Mtr4g1613 626 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 294 382 IPR001179 GO:0003755
Mtr4g1613 626 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 262 IPR001179 GO:0003755
Mtr4g1613 626 SUPERFAMILY FKBP-like 25 154 - -
Mtr4g1613 626 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 70 578 - -
Mtr4g1613 626 SUPERFAMILY FKBP-like 154 261 - -
Mtr4g1613 626 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Mtr4g1613 626 Coils Coil 522 542 - -
Mtr4g1613 626 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 53 149 IPR001179 GO:0003755
Mtr4g1613 626 SUPERFAMILY FKBP-like 266 393 - -
Mtr4g1613 626 Gene3D Tetratricopeptide repeat domain 389 545 IPR011990 GO:0005515
Mtr4g1613 626 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 293 385 IPR001179 GO:0003755
Mtr4g1613 626 Gene3D - 3 151 IPR046357 GO:0003755
Mtr4g1613 626 Gene3D - 263 388 IPR046357 GO:0003755
Mtr4g1613 626 Gene3D - 152 262 IPR046357 GO:0003755
Mtr4g1613 626 SMART tpr_5 451 484 IPR019734 GO:0005515
Mtr4g1613 626 SMART tpr_5 402 435 IPR019734 GO:0005515
Mtr4g1613 626 SMART tpr_5 485 518 IPR019734 GO:0005515
Mtr4g1613 626 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1613 Mtr-Chr4 28256606 28268560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1613 31 550 Calmodulin-binding Proteins AT5G48570 30.320 6.64e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1613 - - gmx:100527937 1066.6