Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1612 ATGGAACCACTGTCAGAGTTTTGGGGTGTTGAGGTTAAGGTTGGACAATCTGTCAAAGTTGATCCCAATGATCTATGTGAAGGATACATTCACATTTCTCAGGTTGCACTTGGAGAGGTAAAGAAAGACAAAGCAAGTGAACCTGTTGTTCTTTACTTGAAAGTTGATGATCAGAAGTTTGTTCTGGGAACTCTTATTAAGGATACCATACCTCAAATTGCTATGGATATCTTTCTAGACGACGAGTCTGAACTGTCCCACAATTCAAAGAATGCTACTGTCTATTTTTCTGGATACAAAGCCTTTCGCATCGATAATGCTGATGACTTTGACTCCGACTCTTCTGATAATGATCCTGAACTTGCTCCTTTGAGGAAACGTGTTGAATCAAAAGCTCAAGCTGCAAAGGAGGCTGCTAAATCTGGAAAACCTATTGCTGAAACTGGTGCCTTGGCAAAGAAAGTCAAGATTGTTGATCCAAAGACTGGTAATATTGTTGATCCAGAGAAATATGAAGAAATATCTGAAGATGAACCAGATTCTGATTTTTATGTGGATGATCATTCAATTTCTGATGAGATCGATACTGATAATGATGAGAATGTTCCAGAGGCTCTTGCGAAGAAGGTGGCGGCATCGGCTATAAATGCTGAGATTAATACTGATAATTATGATACTGATTTATCTGATACTGATACTACTGATTCTGATGGTGATGAAGAGACACCTGCCAAGAAGGTAGAAGCACCACAAGCTTCAGTTCTTACCTATATAGCTAAAAATGCTACTCATGAAAATATCGATACTGATACGAGTGATAGTGATACTACTGATAGCAGTGATGAAGAGACTCCGGCTAAGAAGGTGGATCAAGGCAAGAACAGAGAGAGATCAAATGAGGCTCTATCACAAACTCTAGTTCTTACCAAGAAAGCTAAAATTGCTACTCCTGTAAAGACTGATGATAAAAAATATGTACATATAGCTACTCCCCATCCTATGAAGAAGGGTGGAAAAACTTCTCAGAATGCTGCAAAGGACCAGACTTCCAATTCTAGCAAATCTGCCTCCTTCAAAGCTGGTCAACAAAATAACAAGTCCAAGCAAGGTCGTCAGTGA 1119 0.3932 MEPLSEFWGVEVKVGQSVKVDPNDLCEGYIHISQVALGEVKKDKASEPVVLYLKVDDQKFVLGTLIKDTIPQIAMDIFLDDESELSHNSKNATVYFSGYKAFRIDNADDFDSDSSDNDPELAPLRKRVESKAQAAKEAAKSGKPIAETGALAKKVKIVDPKTGNIVDPEKYEEISEDEPDSDFYVDDHSISDEIDTDNDENVPEALAKKVAASAINAEINTDNYDTDLSDTDTTDSDGDEETPAKKVEAPQASVLTYIAKNATHENIDTDTSDSDTTDSSDEETPAKKVDQGKNRERSNEALSQTLVLTKKAKIATPVKTDDKKYVHIATPHPMKKGGKTSQNAAKDQTSNSSKSASFKAGQQNNKSKQGRQ* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1612 372 MobiDBLite consensus disorder prediction 171 372 - -
Mtr4g1612 372 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 6 203 - -
Mtr4g1612 372 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 183 362 - -
Mtr4g1612 372 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 6 203 - -
Mtr4g1612 372 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 183 362 - -
Mtr4g1612 372 MobiDBLite consensus disorder prediction 341 372 - -
Mtr4g1612 372 MobiDBLite consensus disorder prediction 315 329 - -
Mtr4g1612 372 Gene3D Nucleoplasmin core domain 2 103 - -
Mtr4g1612 372 MobiDBLite consensus disorder prediction 280 297 - -
Mtr4g1612 372 Pfam Nucleoplasmin-like domain 7 99 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1612 Mtr-Chr4 28243763 28247530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1612 310 372 C2H2 Transcription Factor Family AT5G03740 41.429 1.18e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1612 - - mtr:MTR_4g055450 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1612 4 28243763 28247530 Mtr4g1612 4 28243763 28247530 ECH
Mtr2g2845 2 42067539 42070796 Mtr4g1612 4 28243763 28247530 PCT