Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1601 ATGGCGACGGAGAACACCGCAACAATAAACCCTACCCACCCAAAACAACCAAAAGTGGTGGTCATAACCGGCCCCACTGGCTCCGGCAAATCAAAACTCGCCGTCGATTTAGCCTCACACTTCCCCATCGAAGTAATCAATGCTGATTCCATGCAAGTCTACCGTGGCCTCGATATTCTCACCAACAAACTCCCCTTCTCTGAACAAAACGGTGTGGTGCATCATCTATTGGGTTGTGTAAATCCGAATTTGGAGTTCACTGCTAAAACTTTTCGTGATTCTGCTATTCCCATTATTGATGAAATATTGTCTCGTAATCACTTACCTGTTATTGTTGGTGGTACTAATTACTACATTCAGGCTCTTGTGAGTCAGTTTCTGCTAGATGACTCGACGGATGATTTGAGTGAAAGCTATTTGGGTGACTCACCTGGTATTACAGGATTTGATACTAATTTTGTTGCTGAAAATGATAGTTCAAGCAACAGTTATGATTTGCTTAAAGATATTGATCCAGTTGCAGCAAATAGAATCCATCCAAATAACCATAGGAAGATAAATCAATACATTAGTTTGTACTCTCGAACTGGTGTTCTTCCCAGCAAAGTTTTTCAAGGACAGGCTGCAGAGAAGTGGGGTCAAGCTGATAACTTAAGATATGCTTGTTGTTTTATAAGTGTGGATGCATCTCTCCCAATACTGGACAGATATGTAGAGCAGAGGGTAGATGACATGATGGATGCAGGTTTACTCAATGAAGTCTATGATATTTATACTATGAATGCAGATTACACCAGAGGTTTGCGACAGGCCATTGGTGTCCGCGAATTTGAGGATCTTCTAAGAACTAGTGTTTTCAAAAACATAAATCAAAGAGAGGGGGAATTAATTGATGGATCAAGCTTAGAAAATAGTGAGCCATTGTTTGATGGCAATTTGATGGCATGGTTGAGATCTTTCTCTGATACTAAGTCCACAACTCTTTTGGAAGATGCAATTGAGAAAGTAAAGGTTAATACCAGGAGACTTGTCCGCCGTCAGAAGAGGATGCTCAGTCGACTGGAAACATTGTTTGGTTGGGACATACACTACGTTGATTCTACAGAATCAATATTAAGCAAATCAAATGATATATGGAATAGACAAGTGGTTGAATCAGCTACAAAGATAGTAACAACATTCGTGAGTGAGAATGGAAGCTTGTTGTCAACCTTTGGGATGTCAAATGGCACTGGGACAAAAATAATCCAAAGGGACCTCTGGACTCAATACACATGCAAGGCCTGCAATGATCGGGTTCTTAGAGGATTACATGAATGGGAACAACATATACGTGGCCGTGGGCATCGTAAACGCATTTCTAGTCTCAAGAGCAAGGCAAAAGGTCTTAGTTTTGTGGAAAAGAAGTGCGAGCCATCTGAGCACGAATGCTCAGATATATTGTAG 1446 0.4101 MATENTATINPTHPKQPKVVVITGPTGSGKSKLAVDLASHFPIEVINADSMQVYRGLDILTNKLPFSEQNGVVHHLLGCVNPNLEFTAKTFRDSAIPIIDEILSRNHLPVIVGGTNYYIQALVSQFLLDDSTDDLSESYLGDSPGITGFDTNFVAENDSSSNSYDLLKDIDPVAANRIHPNNHRKINQYISLYSRTGVLPSKVFQGQAAEKWGQADNLRYACCFISVDASLPILDRYVEQRVDDMMDAGLLNEVYDIYTMNADYTRGLRQAIGVREFEDLLRTSVFKNINQREGELIDGSSLENSEPLFDGNLMAWLRSFSDTKSTTLLEDAIEKVKVNTRRLVRRQKRMLSRLETLFGWDIHYVDSTESILSKSNDIWNRQVVESATKIVTTFVSENGSLLSTFGMSNGTGTKIIQRDLWTQYTCKACNDRVLRGLHEWEQHIRGRGHRKRISSLKSKAKGLSFVEKKCEPSEHECSDIL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1601 481 Gene3D - 17 410 IPR027417 -
Mtr4g1601 481 Pfam IPP transferase 52 349 - -
Mtr4g1601 481 Gene3D - 152 208 - -
Mtr4g1601 481 Gene3D Classic Zinc Finger 419 464 - -
Mtr4g1601 481 Hamap tRNA dimethylallyltransferase [miaA]. 19 373 IPR018022 GO:0008033
Mtr4g1601 481 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 15 398 IPR039657 -
Mtr4g1601 481 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 15 398 - -
Mtr4g1601 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 260 IPR027417 -
Mtr4g1601 481 TIGRFAM miaA: tRNA dimethylallyltransferase 19 283 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1601 Mtr-Chr4 28085708 28090676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1601 22 458 C2H2 Transcription Factor Family AT2G27760 56.689 1.48e-170 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1601 K00791 - gmx:100792690 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1601 4 28085708 28090676 Mtr4g1601 4 28085708 28090676 ECH