Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1597 ATGAACCGGAAATGGGACCGGAGAGACAACAAGGTTTCCAAGAAGCAGAAATTACTCAACAGCGCCGAAGAAGAACTCGAAGCTAAATTAGGGTTTGATCTCTTCTCTGAAGGTGAAAAACGACTCGGATGGTTACTCACTTTTTCATCCTCATCTTATGAGGACGAGGATACCGGCAAAGTCTACAGTTGCATTGATCTTTACTTTGTCAAACAGGATGGGTCATCATTCAAGACAAAATACAGATTTCGCCCTTATTTCTATGTAGCTACGAAGAACAAAATGGAGATGGATGTGGATGCGTACCTGAGACGACGTTATGAAAGCCAGATTGCAGATATTAAAATTGTAGAAAAGGAAGACCTGGATCTTAAAAACCATTTGTCTGGATTGAGAAAATCTTATTTACGGCTTTCGTTTGATACCGTGCAACAACTGATGAATGTGAAGAGTGACCTGATGCAAGTTGTTGAAAGAAATAAGGCGAAGTCTGATGCTGCAGAAGCCTATGAGTCCATATTAACGGGGAGAAGAGAACAAAAACTTCAAGATTTCCTAGATTGCATAATTGATCTTCGTGAATATGATGTTCCTTACCATGTTCGCTTTGCTATTGACAACGATATACGGTGTGGCCAGTGGTATGATGTTGGTGTGTCTAATGATGGGGTTACACTTGAGAGGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTGTTTGTGCATTTGATATCGAGACCACGAAACTTCCATTGAAGTTTCCTGATGCTGACTATGACTCAGTTATGATGATTTCATATATGGTAGATAGGCAAGGGTATTTAATCACAAATAGAGAGTGTGTTGGGGATGATATAGAGGATTTAGAGTTCACTCCAAAACCAGAGTTCGAAGGGTTTTTTAAGGTGACAAATGTTCAAAACGAGATTGAGCTCCTTAGATTGTGGTTTTCTCATATGCAAGAGGTTAAACCTGGCATCTATGTGACATATAATGGCGATTTCTTTGATTGGCCATTCCTGGAACGACGGGCAGCCCATCATGGGTTCAAAATGAGCGATGAGCTGGGGTTTCAATGTGACATGAATCAAGGGGAATGTCGTGCTAAATTTGCTCCCCATTTAGATTGTTTTGCATGGGTTAAACGTGATAGTTATCTTCCTCAGGGGAGCCAAGGCCTCAAGGCTGTAACAAAAGCAAAGTTGGGTTATGATCCAAAAGAGGTGAACCCCGAGGACATGGTACGCTTTGCAAAGGAAAAGCCGCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGTCAACATATTACTTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCCACTATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTTATGGTTCAGTCATACAAGGCCAATGTTATCTGCCCTAACAAGCACCAATCTGACCCGGAGAAGTTTTATAAGAATCATCTTCTTGAGAGTGAGACGTACATAGGTGGCCACGTTGAATGCCTAGAAAGTGGTGTATTTAGATCTGATATTCCATGCAGTTTCACACTTGAGCCATCTGCCTTTGAGCAATTGATCAGCAATCTTGATCGAGATCTACAATATGCTATAAGAGTAGAGGGAAAGATGGATTTGGAATCTGTCTCAAATTATGATGAAGTGAAGAATGCTATCATGGAAAAGCTTGTAAACTTACGAGATGCGCCGATACGTGATGACTGCCCCCTCATTTATCATTTGGATGTAGCTGCAATGTATCCAAACATAATTTTAACAAATCGGCTTCAGCCTCCATCAATTGTTACGGATGAGATTTGTACTGCATGTGACTTCAACCGTCCCGGAAAGACTTGTCTACGCAAGCTTGAGTGGGTTTGGCGTGGAGCAACCTTTGCGGCAAAGAAAAGTGACTATTATCATCTAAAGAAGCAAATTGAGTCGGAGTTTGTAGATGGGGTAAATGAAAGGTCATCAAAATCTTTTCTTGACCTGCCCAAGGCCGAACAACAATTAAGACTAAAAGAGCGTTTAAAGAAATACTGCCAAAAGGCATATAAACGGGTACTTGACAAACCAGTTACCGAACTCCGAGAAGCTGGAATCTGCATGCGCGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGGAGATATGAATATAAAGGTCTTAACAAGGTTTGGAAGGGAAAGCTATCAGAAGCCAAAGCCAGTGGAAATTCTATAAAAATCCAGGAAGCACAAGACATGGTAGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATTCTTAATTCCTTTTATGGATACGTAATGCGCAAGGGTGCTAGATGGTACTCCATGGAAATGGCAGGCGTTGTCACATATACCGGTGCAAAAATAATTCAGAATGCTCGCTTGCTGGTAGAGAAAATAGGAAAACCACTTGAACTAGACACAGATGGTATCTGGTGTGCACTTCCCGGATCTTTTCCAGAAAATTTCACTTTTAAAACAGTAGACTCCAAACGGAAGCTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAATGATCAGTACCAGACACTCACGGATCCAAATAGGAAAACTTATACAACTCATAGTGAATGTTCTATTGAATTTGAGGTGGATGGACCTTACAAGGCAATGATAATTCCTGCTTCCAAGGAGGAAGGAATTTTAATTAAGAAGAGATATGCTGTTTTTAATGATGATGGATCCCTTGCAGAACTGAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTGTTCCAGGCTGATCTTTTTGAAAAGTTTCTGCATGGATCAACCTTAAAGGAATGCTATTCAGAAGTTGCTAAAGAGGCAAACCGCTGGCTTGATCTTCTTGATAACCAAGGAAAGGATATTGCAGATAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTCAGCAGAAGTCTTGTGCTGTTACCACTGCTAAACGTCTTGCTGACTTTCTTGGTGATACAATGGTCAAGGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAGCCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTGAAACCGATGCTGATATAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGCTCTATAATTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTTCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTCCCCAGGGTTGTTCATCCTGATTGGTTGCATAAAAAGGTTCGCGAGAAGGAGGACAAGTTTCGCCAAAGAAAAATAGATGATACCTTTAAGTCAATGAACAAGAATGAGCACTCGAAAAAGCATAATGATTCTAGTGGTGTCAACCTTGTTATGGTTGATGACACTGTTAATGACATGGAGGACTTTGGAAACAAGGGAAGGAGTTCTACATTAGGACCTAGACCAATTATACGCCATTATGAAGCTAATAATGAACAGCATTCAGAGAAGTTCAATGGTCAAGAAGATTCAGAGCAACAACATATTGACAGTAGCAATATAGATCAACAAAATGAAACATCATGTGAAAATGTTGATAGAACTGTAGATTATCAAGGATGGCTTCAATTAAAAAAGAGAAAGTGGAAAAGTATGCTGGGAAAGAGAAAGAAACAAAGATTGGAGAATTCAAAGAAATCTGACCATTTAAATGGCAGTCTTGAACAAACCAACAGTAAGATGAATCATGGCAGAAGTAATGTCAGTTCATATTTTAGAAGGCATGAGGTAGTCCTGACACGGGGCCACTGGCAGATAATACAGTTGGTCCACAGTCCACAAGTTGGTCAATTTTTTGCTTGGGTTGTTGTTGATGGGATTATGCTCAAGATTCCTATTTCTATTCCTAGAGTCTTTTACCTTAACTCTAGATCACCAACTGAAGAGTTTTCAGGCAAACGTGTCAACAAGACTCTTCCTCATGGAAGACATAGTTATAACCTGTACGAGGTCACAATTAATGAAGTACAATATAAAGAAGAAAGCAAAAAACTTGCCGCTCTTCTCGCAGATCCTGATATTGAGGGAGTATATGAAACCAAGGTGCCACTGGAGTTCAACGCTATAGTCCAGCTTGGTTGTGTTTGTAAGGTGGATAAAACTGCTAAAAAACGTAGCCTACAAGAGCCATGGAATTTGAACGAATTGCACATGAAGACCACAACAGAATGCGCTTATCTTGAACAATCAATATCTTTGTTTTACTTATACCATAGCATCTCAGAGGGACGGGCTATATATGCTGGATATTTTCCTGGGTCACAAGCAATAACTTTTGTGGTAGTTAATCCCTACCAAAACCAGGACTTGTCACCAGCTTATCTTGACAGACAATTTCGCGATGCCTGCAGAACCTTGTCTATTGAGGCACCTCCGAGGAATGGCATAAATTTTAAAGTGGAATATGTTGCACTCGTCAAGGATGCTGAAACAATAATGCAAAGCGCAATAAATGATCTCAGGAGTGAACATGGGCCTATGGTTGCTGTCATTGAATGCCCAGATGTTCAACTATTAAAATTGGGCATTCGAGCTCTAGATGATTTTCCATGCCTGAGTATTCCTTTTAATGCACGTGATAGTCAGTATCCGATTCTTGGATGGCAACAAATGGCTGCTAAACTTGGAATGCAACGTTGTGCAGCTTCTGTCCAGTGGCTAAATGAGAAAATTGCTCTATCAAGATATGCCCACGTACCACTGGGGAACATGGAATTTGACTGGCTTATGTTTACAGTTGATACCTTCTTTTGTAGAGCATTACGTGATAATCAACAGGTGCTTTGGATATCTGATGATGGTTTTCCAGATTTGGGTGGCAACATTGGTGAAGAGAACTGTTTTCTAGATGAGGTGCGCCAACCTGTCTGTACGTTTCCTGGAGCTTATAGAAAAATTAGCGTGGAGCTAAAGATACACCACCTGGCTGTAGATGCACTTTTAAAATGCAACCAAGTTAATGAAATGGAAGGAGGTGCTTTGTTAGGATTTGGTCATGAATTTGATTCTGAAGCATTCCAAGTGAATGGTCAGAATGGCTTTGAAGAGTCTACTTCATGCACACATGCCTTTCGAGTCCTAAAACATTTGATCCAGCGGTGCCTTGCAGATGCTGTCACATCTGGAAATGTTTTTGCTGATGCAATATTGCAACATCTGTATAGATGGCTTTGCAGCCCTCAATCAAAATTTCATGATCCTGCTCTTCACCAGCTACTCCACAAGGTCATGCAAAAGGTCTTCGCGTTGTTGTTGGCAGAGTTCCGCAAGTTGGGTGCAACAATTGTATTTGCAAACTTCTCAAAGATAATTATAGACACAGGAAAATATGATTTTTCTACGGCCAAAGCATACTGTGATAGTTTGTTAAGAACTATACAATCTAGAGACCTATTTGAATGGATTGAGCTTGAACCACTGCAGTTCTGGTGCTCATTGCTGTTCATGGACCAGTATAACTACGGTGGAATACCAGCAAAATCTGATGAAGCCATGAATGATGAGTCTCAAGTTGACATAATATCAAGTTGGAATATTGCAGAATATTTGCCGAAAAAAATCCAAGACCATTATGTTTTCATAGTTTCTCAATTCATGTATATTCCTTGGAACTATACACGAAAACAAGCAGCAATCAGGGCTTCAGTGCAGAATGGAGACTCCTGCACCCCATCAATTAATATTGGAGCTGCAGAGGCTTTCGAATCAGAAATAACTGAATATATTAAAGAGCAGATTAGCTCTTACTTCACTGACAAACTCCTTGGAGTTGTTCGTGATATTGTTCTTCATATGAAGGGGATGGGCAGATCAGAAAGCGACCAGAGTACATCATCTGGCCTTCATCAACTTACGGATGATCTCCATAGAGGGGATGCAGCCTTGGAGTTTATCAAGCATGTCTGTGCTGTCCTTGCCCTCGACCAAAGTGTGCAGCATGATGTTCATGTTATGAGAAAAAATTTGTTAAAATATGTTCGTGTCAGGGAGTTTGCTCCAGAAGCAGAGTTTCATGATCCCTGTCATTCCTTCATATTACCCAATGTTATCTGCAGCTATTGTAATGAGTGCCGAGATTTGGACTTGTGCCGTGATCCAACTTTATTGAACGAAGAGTGGCATTGTGCCGTACCTCAATGTGGCCAGCCTTATGACCGTGAGGTGATGGAGAATGCTCTACTTCAGATTGCACGACAAAGGGAGCGGCAATACCACTTGCAAGATCTGGTATGTGTCAGGTGCAACCAGGTGAAAGCTGCGCATTTGGCTGAGCAATGTGCATGTGCAGGCTCATTTAAGTGCAAGGAAGATGCAACAGAGTTTTGCAAAAAGATGCGGGTTATCTACAACATAGCTTCTCGTCAGAAGTTCCAACTTCTTCAAGAATGTACCGCCTGGATGTTAGAACTCAAAATTGAATGA 6612 0.4087 MNRKWDRRDNKVSKKQKLLNSAEEELEAKLGFDLFSEGEKRLGWLLTFSSSSYEDEDTGKVYSCIDLYFVKQDGSSFKTKYRFRPYFYVATKNKMEMDVDAYLRRRYESQIADIKIVEKEDLDLKNHLSGLRKSYLRLSFDTVQQLMNVKSDLMQVVERNKAKSDAAEAYESILTGRREQKLQDFLDCIIDLREYDVPYHVRFAIDNDIRCGQWYDVGVSNDGVTLERRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDSVMMISYMVDRQGYLITNRECVGDDIEDLEFTPKPEFEGFFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGFKMSDELGFQCDMNQGECRAKFAPHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPKEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQSYKANVICPNKHQSDPEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFTLEPSAFEQLISNLDRDLQYAIRVEGKMDLESVSNYDEVKNAIMEKLVNLRDAPIRDDCPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGATFAAKKSDYYHLKKQIESEFVDGVNERSSKSFLDLPKAEQQLRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTVDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPNRKTYTTHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGSLAELKGFEIKRRGELKLIKVFQADLFEKFLHGSTLKECYSEVAKEANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDADIMKFYVRKWCKVSSDVGIRSIIDWSYYKQRLSSSIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKIDDTFKSMNKNEHSKKHNDSSGVNLVMVDDTVNDMEDFGNKGRSSTLGPRPIIRHYEANNEQHSEKFNGQEDSEQQHIDSSNIDQQNETSCENVDRTVDYQGWLQLKKRKWKSMLGKRKKQRLENSKKSDHLNGSLEQTNSKMNHGRSNVSSYFRRHEVVLTRGHWQIIQLVHSPQVGQFFAWVVVDGIMLKIPISIPRVFYLNSRSPTEEFSGKRVNKTLPHGRHSYNLYEVTINEVQYKEESKKLAALLADPDIEGVYETKVPLEFNAIVQLGCVCKVDKTAKKRSLQEPWNLNELHMKTTTECAYLEQSISLFYLYHSISEGRAIYAGYFPGSQAITFVVVNPYQNQDLSPAYLDRQFRDACRTLSIEAPPRNGINFKVEYVALVKDAETIMQSAINDLRSEHGPMVAVIECPDVQLLKLGIRALDDFPCLSIPFNARDSQYPILGWQQMAAKLGMQRCAASVQWLNEKIALSRYAHVPLGNMEFDWLMFTVDTFFCRALRDNQQVLWISDDGFPDLGGNIGEENCFLDEVRQPVCTFPGAYRKISVELKIHHLAVDALLKCNQVNEMEGGALLGFGHEFDSEAFQVNGQNGFEESTSCTHAFRVLKHLIQRCLADAVTSGNVFADAILQHLYRWLCSPQSKFHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDFSTAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPAKSDEAMNDESQVDIISSWNIAEYLPKKIQDHYVFIVSQFMYIPWNYTRKQAAIRASVQNGDSCTPSINIGAAEAFESEITEYIKEQISSYFTDKLLGVVRDIVLHMKGMGRSESDQSTSSGLHQLTDDLHRGDAALEFIKHVCAVLALDQSVQHDVHVMRKNLLKYVRVREFAPEAEFHDPCHSFILPNVICSYCNECRDLDLCRDPTLLNEEWHCAVPQCGQPYDREVMENALLQIARQRERQYHLQDLVCVRCNQVKAAHLAEQCACAGSFKCKEDATEFCKKMRVIYNIASRQKFQLLQECTAWMLELKIE* 2204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1597 2203 MobiDBLite consensus disorder prediction 1262 1295 - -
Mtr4g1597 2203 Gene3D Palm domain of DNA polymerase 750 934 IPR023211 -
Mtr4g1597 2203 MobiDBLite consensus disorder prediction 1213 1238 - -
Mtr4g1597 2203 Pfam Domain of unknown function (DUF1744) 1521 1887 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Mtr4g1597 2203 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 29 2198 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Mtr4g1597 2203 MobiDBLite consensus disorder prediction 1222 1238 - -
Mtr4g1597 2203 MobiDBLite consensus disorder prediction 1280 1295 - -
Mtr4g1597 2203 Pfam DNA polymerase family B, exonuclease domain 70 397 IPR006133 -
Mtr4g1597 2203 Gene3D - 938 1122 IPR042087 -
Mtr4g1597 2203 SMART DUF1744_2 1504 1887 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Mtr4g1597 2203 Pfam DNA polymerase family B 753 1061 IPR006134 GO:0000166|GO:0003677
Mtr4g1597 2203 SUPERFAMILY DNA/RNA polymerases 483 1111 IPR043502 -
Mtr4g1597 2203 CDD DNA_polB_epsilon_exo 237 440 - -
Mtr4g1597 2203 CDD POLBc_epsilon 500 1119 - -
Mtr4g1597 2203 SMART polmehr3 236 839 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mtr4g1597 2203 Gene3D - 235 465 IPR036397 GO:0003676
Mtr4g1597 2203 SUPERFAMILY Ribonuclease H-like 62 464 IPR012337 -
Mtr4g1597 2203 Gene3D DNA Polymerase, chain B, domain 1 47 223 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1597 2 2198 Core DNA Replication Machinery Family AT2G27120 67.515 0.0 3027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1597 K02324 - gmx:100812003 3837.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1597 4 28006547 28032338 Mtr4g1597 4 28006547 28032338 ECH