Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1587 ATGAATTTTGATCCTCCTGTCTTAAGAAATCAAAACCAAAACCTTCTATACTTCAATGAAAATTCTTTCTCTAATGATAATATCTCTTGGGAATTAGAAGATATCGTTGATTTCTTCAATGGTGATATCAATTTCAACAAGGACTCACTATCACAAACAAAAGAATCATTATTATTACCATTATCATTACCTGCTGAATCCAACTCTTCATATCCATTACTAAGCAATGGATCACTTGAAGTCTCATCTAATACTACTTACACACAAGTGATCAAAGAGAAACAAACATCATTCTCATTGCCCTTAAAAAAAAACACATCATCGTCGTCCTTGCCACTACCACCAATTAAAGAAAGTAACACAAGGGTATTTAGAGGAGTACGAAGAAGGCCATGGGGGAAATTCGCGGCGGAGATAAGGGACTCAACAAGAAAAGGGGCTAGAGTATGGCTTGGAACATTCAACACGGCCGAAGAAGCTGCTTTAGCTTACGACCAAGCTGCTTTTTTAGCAAGAGGTTCATTGGCAGTGTTGAATTTTCCAGAGGATGTAGTTAAAGAATTACTCAAAGAAATGGCTAGAAATTCTGAGCCTTTAGAAGAAGGTACTTCTACTTCCCCTGTGTTGGCAATAAAGAGAAAATACATCAAGAGAAAATCACCCAATAAGGTTAGCAAAAAGAAAATGAAAACTGATCATAATGGTGATCGAACAAAGAGAGAGACCAATACTAAATCTAAAAATGTGTTTGTGTTTGAAGATTTGGGTGCTGAATATCTTGAGCAACTATTGAGCTTAACTTCTTAG 807 0.3618 MNFDPPVLRNQNQNLLYFNENSFSNDNISWELEDIVDFFNGDINFNKDSLSQTKESLLLPLSLPAESNSSYPLLSNGSLEVSSNTTYTQVIKEKQTSFSLPLKKNTSSSSLPLPPIKESNTRVFRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTAEEAALAYDQAAFLARGSLAVLNFPEDVVKELLKEMARNSEPLEEGTSTSPVLAIKRKYIKRKSPNKVSKKKMKTDHNGDRTKRETNTKSKNVFVFEDLGAEYLEQLLSLTS* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1587 268 SMART rav1_2 123 187 IPR001471 GO:0003700|GO:0006355
Mtr4g1587 268 SUPERFAMILY DNA-binding domain 123 182 IPR016177 GO:0003677
Mtr4g1587 268 MobiDBLite consensus disorder prediction 227 242 - -
Mtr4g1587 268 CDD AP2 124 183 IPR001471 GO:0003700|GO:0006355
Mtr4g1587 268 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 62 266 - -
Mtr4g1587 268 Gene3D AP2/ERF domain 123 183 IPR036955 GO:0003700|GO:0006355
Mtr4g1587 268 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Mtr4g1587 268 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Mtr4g1587 268 Pfam AP2 domain 123 173 IPR001471 GO:0003700|GO:0006355
Mtr4g1587 268 MobiDBLite consensus disorder prediction 220 242 - -
Mtr4g1587 268 PANTHER DNA-BINDING DOMAIN 62 266 IPR044808 GO:0003700|GO:0009873
Mtr4g1587 268 ProSiteProfiles AP2/ERF domain profile. 123 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1587 Mtr-Chr4 27785417 27786223 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1587 63 264 AP2-EREBP Transcription Factor Family AT3G23240 46.798 5.37e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g1587 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1587 K14516 - gmx:100801682 212.616