Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1574 ATGTATAGCAATTTCAAGGAACAAGCAATAGAATTCGTGAAACAAGCAGTAACAGAAGACAATTCTGGAAACTATGCAAAAGCCTTTCCTTTATACATGAACGCGTTAGAGTATTTCAAAACTCATCTCAAGTACGAGAAAAACCCTAAAATTAAGGAAGCAATTACGCAGAAATTCACCGAGTATCTTCGTCGTGCGGAGGAGATCCGTGCTGTGCTTGATGATGGTGGGCCGGGTCCAGCTTCTAATGGAGATGCTGCTGTTGCTACTAAGCCGAAAACGAAGGGGAAGGGTGGTGGGGAGGGTGAAGGGGAGGATGCTGAGCAGAGTAAGCTTAGGGCGGGGTTGAATTCCGCGATTGTGAGGGAGAAGCCGAATGTGAAGTGGAATGATGTTGCTGGGTTGGAGAGTGCTAAGCAGTCGTTGCAGGAAGCAGTTATCTTGCCTGTTAAGTTTCCTCAGTTTTTTACTGGTAAAAGACGACCTTGGAGAGCATTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCTGTTGCTACCGAGGCTGATTCTACATTTTTCAGTGTTTCTTCATCAGACCTCGTTTCGAAATGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTTGAAATGGCTCGCGAAAGTGCACCTTCCATCATATTTGTTGATGAAATAGATTCTCTATGTGGTACGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTCGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGGCGTTTTGATAAGCGTATATACATTCCACTGCCAGATTTAAAGGCTCGCCAACACATGTTCAAGGTGCATCTAGGAGATACTCCCCATAACTTGACTGAAAGTGATTTTGAACACTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATAGCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGTAAAACCCAAGATGCCATGTTTTTCTTTAAGAGTCCGGAAGGTATGTGGATACCGTGTGGACAGAAGCAACAAAATGCAGTACAAGTTACAATGCAGGATCTTGCCACACAGGGACTAGCTTCAAAGATCCTACCACCGCCTATATCAAGAATCGATTTTGACAAAGTACTTGCTAGACAAAGGCCCACAGTAAGCAAATCTGACCTTGATGTTCACGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGTTAA 1302 0.4409 MYSNFKEQAIEFVKQAVTEDNSGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATKPKTKGKGGGEGEGEDAEQSKLRAGLNSAIVREKPNVKWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARKTEGFSGSDIAVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGQKQQNAVQVTMQDLATQGLASKILPPPISRIDFDKVLARQRPTVSKSDLDVHERFTKEFGEEG* 434
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1574 433 MobiDBLite consensus disorder prediction 73 110 - -
Mtr4g1574 433 MobiDBLite consensus disorder prediction 96 110 - -
Mtr4g1574 433 PANTHER AAA DOMAIN-CONTAINING 1 433 - -
Mtr4g1574 433 SMART smart 2 79 IPR007330 -
Mtr4g1574 433 SUPERFAMILY MIT domain 2 81 IPR036181 -
Mtr4g1574 433 Pfam Vps4 C terminal oligomerisation domain 366 430 IPR015415 -
Mtr4g1574 433 CDD AAA 133 296 - -
Mtr4g1574 433 Gene3D - 125 421 IPR027417 -
Mtr4g1574 433 Gene3D - 298 413 - -
Mtr4g1574 433 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Mtr4g1574 433 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Mtr4g1574 433 Gene3D - 6 75 - -
Mtr4g1574 433 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Mtr4g1574 433 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 433 - -
Mtr4g1574 433 SMART AAA_5 162 298 IPR003593 -
Mtr4g1574 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 429 IPR027417 -
Mtr4g1574 433 CDD MIT_VPS4 4 77 IPR045253 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr4g1574 Mtr-Chr4 27459923 27465671 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1574 161 354 Calmodulin-binding Proteins AT3G56690 36.224 3.04e-35 137
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1574 K12196 - gmx:100788150 791.956
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1574 4 27459923 27465671 Mtr4g1574 4 27459923 27465671 ECH
Mtr2g2869 2 42320178 42325805 Mtr4g1574 4 27459923 27465671 ECH
Mtr2g2869 2 42320178 42325805 Mtr4g1574 4 27459923 27465671 PCT