Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1564 ATGGCTATGATGGAGTGTGATGTAGAGGACAATAATTTCATTGAGTGGCTCAAACCATCTAATTCCTCTAAATCATATCTAACTTCATCATCATCATCATCTTCTTCTACCACTCAAAATGAAACTATTCAATTCTTTCCTATTTTGAGTGCAAATTTTTCAAAAGATGAAGAACGTGAAGTGCCACAAATTGAGGGTTTTGAGTTCAAAGAAGAAAAAGAGATTGTGGCTTTGCATATTGGATTACCTCATGACACTAAAAAATATCTTGATGATGAGAAGAAGTTTTTCCATTTTAAAGAAGAAGAAGAAGAAGAAAAGGCTTCTAAAAAAACCTTCCAAAGGTTTTGGATACCAACTCCTGCACAGATCCTTGTTGGACCTATGCAATTTGCTTGCTCCATATGCAACAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATTTAGGAAAGGGCCAGACTCACTAAGAGGCACACAACCAGCTGCAATGCTAAGGCTACCATGCTACTGTTGTGTTCAAGGTTGCAAGAACAACATCAATCATCCAAGAGCTAAGCCTTTGAAAGACTTTAGAACTCTCCAAACTCACTACAAAAGAAAACATGGGACAAAACCATTTATGTGTAGAAAATGTGGGAAAACATTTGCTGTCAAAGGTGATTGGAGGACTCATGAAAAGAATTGTGGCAAGTTATGGTATTGCACTTGTGGTTCAGATTTTAAACACAAAAGATCTCTCAAAGATCATATTAGGTCTTTCGGAAAAGGTCATCGTCGTCTTTCCTCGATTGATGATCGAGTTTTCGAGGAGGAGAAGGAATGTGTTACTGGGTCTGAAGAAGATGAATTTGCTCCTACATGA 888 0.3773 MAMMECDVEDNNFIEWLKPSNSSKSYLTSSSSSSSSTTQNETIQFFPILSANFSKDEEREVPQIEGFEFKEEKEIVALHIGLPHDTKKYLDDEKKFFHFKEEEEEEKASKKTFQRFWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCVQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHRRLSSIDDRVFEEEKECVTGSEEDEFAPT* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1564 295 Gene3D Classic Zinc Finger 130 153 - -
Mtr4g1564 295 Gene3D Classic Zinc Finger 211 271 - -
Mtr4g1564 295 SUPERFAMILY beta-beta-alpha zinc fingers 122 154 IPR036236 -
Mtr4g1564 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 235 IPR013087 -
Mtr4g1564 295 SMART c2h2final6 177 210 IPR013087 -
Mtr4g1564 295 SMART c2h2final6 215 235 IPR013087 -
Mtr4g1564 295 SMART c2h2final6 131 153 IPR013087 -
Mtr4g1564 295 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 38 291 - -
Mtr4g1564 295 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Mtr4g1564 295 SUPERFAMILY beta-beta-alpha zinc fingers 197 235 IPR036236 -
Mtr4g1564 295 PANTHER ZINC FINGER PROTEIN WIP2 38 291 IPR043584 GO:0003700|GO:0010468
Mtr4g1564 295 Pfam C2H2-type zinc finger 131 150 - -
Mtr4g1564 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1564 Mtr-Chr4 27375825 27381865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1564 9 285 C2H2 Transcription Factor Family AT1G08290 55.287 2.31e-112 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g1564 zf-C2H2_6 9.2e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1564 4 27375825 27381865 Mtr4g1564 4 27375825 27381865 ECH
Mtr2g2871 2 42347516 42351556 Mtr4g1564 4 27375825 27381865 PCT