Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1560 ATGGCTAGCCAAAGAATTGGAGAAATTGGTTTGTCTGAGTCTGGACCTTCAAGTCAACATGTCCCTTATGGAGTTCTTCATGGAATTACTACCTCAACATCACCCTTAATGAATCAAGGGTCTGCTTTTAATTTTGGAGAGCTAGAAGAGGCAATTGTTCTTCAAGGAATCAAGATAAGAAATGATGAAGGAAAAGCATCTGCTTTATTTACAAGCAAACCAGCAGCTACACTTGAAATGTTTCCTTCATGGCCAATTAGATTCCAACAAACACCAAGAGTTGTAGCTTCTCTCACTTCTCCATCTCTGACCATTCCTTATGGAGGTTCAAAATCAGGAGGAGAAAGTACTGATTCAGGATCAACAGAGCTACAATTTGAAACAAATTCTCCAATAAGTGTAAAAGCATCTTCTTCAGATCATCATAATCATGCTTTTCAACAGGAGACAGCAACTGATGATGGATTAAGAACAGGCACATCAACACAGAATCAATCAAAAGCCAAATCACCTCAACAAAAGAAAAAAGGAGCTGTTTCCACATCAGAAAAGACACTTGATCCAAAGACACTGAGACGTTTGGCACAAAACAGAGAAGCTGCAAAGAAAAGCCGTCTGAGGAAAAAGGCTTATGTACAGCAGCTGGAGTCAAGTAGATTAAGGCTATCCAGTCTCGAACAAGACCTTCAAAGAGCACGCTCCCAGGGACTATTCTTGGGTTGTGGTGGTGGCAATATAAGCCCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGATGGCTAGAAGAAGATCAACGACACATGGCGGAGCTTAGGGCGGGGCTGCAGGCATCATTGGGAGATAATGAATTGAGAGTGATCGTAGACGGATATCTTTATCATTACGACGAGCTTTTCCGATTGAAGGAGGTGGCTGTTAAATCAGATGTTTTTCACCTTATTAAAGGCATTTGGGCTTCACCTGCTGAGAGACCCTTCATTTGGATAGGTGGTTTCAGACCCTCAGAACTCATCACGATGTTGACACAACAATTGGAGCCCCTAGCTCAGCAACAAATAGATGGGATAGTGGACCTGAATACTTCATCGTTTCAAGCAGAAGAAGCTCTCTCTAAAGGCCATGAACAGCTCCACAATGCTCTTGTTCACACCATCGCCGGAGGGCCTGTAATTGACGGTATGCAACAGATGGTCGCCGCCATGGGCAGGATTTCCAATCTTGAAAAATTTGTTCATGAGGCCGATAATTTGAGACAACAAACGCTTCACCAATTATGTCGAATATTGACGGTTCGTCAAGCGGCAAGATGTTTCATTGTTATTGGAGAGTATTATGGACGCCTTCGAGCCCTTAGCTCTCTTTGGGCTTCAAGACCACGAGAGAACATGATCAATGATGATAACTCATGCCAAGCAACCACAGAATTGCAAATGGTTCAACCTTCTCATAGTCATTTCTCAAGTTTCTGA 1470 0.4279 MASQRIGEIGLSESGPSSQHVPYGVLHGITTSTSPLMNQGSAFNFGELEEAIVLQGIKIRNDEGKASALFTSKPAATLEMFPSWPIRFQQTPRVVASLTSPSLTIPYGGSKSGGESTDSGSTELQFETNSPISVKASSSDHHNHAFQQETATDDGLRTGTSTQNQSKAKSPQQKKKGAVSTSEKTLDPKTLRRLAQNREAAKKSRLRKKAYVQQLESSRLRLSSLEQDLQRARSQGLFLGCGGGNISPGAAMFDMEYARWLEEDQRHMAELRAGLQASLGDNELRVIVDGYLYHYDELFRLKEVAVKSDVFHLIKGIWASPAERPFIWIGGFRPSELITMLTQQLEPLAQQQIDGIVDLNTSSFQAEEALSKGHEQLHNALVHTIAGGPVIDGMQQMVAAMGRISNLEKFVHEADNLRQQTLHQLCRILTVRQAARCFIVIGEYYGRLRALSSLWASRPRENMINDDNSCQATTELQMVQPSHSHFSSF* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1560 489 Pfam bZIP transcription factor 189 229 IPR004827 GO:0003700|GO:0006355
Mtr4g1560 489 MobiDBLite consensus disorder prediction 100 192 - -
Mtr4g1560 489 CDD bZIP_HBP1b-like 189 240 - -
Mtr4g1560 489 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 231 IPR004827 GO:0003700|GO:0006355
Mtr4g1560 489 SMART brlzneu 185 247 IPR004827 GO:0003700|GO:0006355
Mtr4g1560 489 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 192 207 IPR004827 GO:0003700|GO:0006355
Mtr4g1560 489 MobiDBLite consensus disorder prediction 100 179 - -
Mtr4g1560 489 SUPERFAMILY Leucine zipper domain 189 231 IPR046347 GO:0003700|GO:0006355
Mtr4g1560 489 Pfam Seed dormancy control 267 342 IPR025422 GO:0006351|GO:0043565
Mtr4g1560 489 PANTHER TRANSCRIPTION FACTOR TGA9 66 468 - -
Mtr4g1560 489 ProSiteProfiles DOG1 domain profile. 250 458 IPR025422 GO:0006351|GO:0043565
Mtr4g1560 489 MobiDBLite consensus disorder prediction 1 22 - -
Mtr4g1560 489 Gene3D - 188 237 - -
Mtr4g1560 489 Coils Coil 208 235 - -
Mtr4g1560 489 PANTHER TRANSCRIPTION FACTOR TGA9 66 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1560 Mtr-Chr4 27322645 27332116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1560 138 489 bZIP Transcription Factor Family AT1G08320 64.722 3.94e-164 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr4g1560 DOG1 4.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1560 K14431 - gmx:778195 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1560 4 27322645 27332116 Mtr4g1560 4 27322645 27332116 ECH