Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1553 ATGGCTGAAACGGAGGAGCTTCCCAAAACTATCGTACGTCGTGTGGTGAAGGAGAAGCTTTCCACTTGCTCCGACGACGGCGACATTGCCGTTCACAAAGACGCTCTTCTTGCATTCTCCGAAAGTGCCAGAATCTTCATCCACTACCTTTCAGCTACGGCTAATGATATATGTAGGGAGTCAAAGAGGCAGATTATCAATGCTGAAGATGTGTTCAAAGCTCTTGAAGAAACCGAGTTTGCTGAGTTTGTTGGCCCTCTAAAAGATTCTCTTGAAGAGTTTAGGAAGAAGAATGCTGGGAAGAAAGCGGCGGTGCCAAAAGGAAAGGGAGATGAAAAGGGAAAGGGAGATGAGGAAAAAAGGAAAAGAAAGGCAGAAGGTGAGCCATCTGATAAAGGCGATGGTGTTGATGATGACCAATGA 423 0.4586 MAETEELPKTIVRRVVKEKLSTCSDDGDIAVHKDALLAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEETEFAEFVGPLKDSLEEFRKKNAGKKAAVPKGKGDEKGKGDEEKRKRKAEGEPSDKGDGVDDDQ* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1553 140 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 2 136 - -
Mtr4g1553 140 SUPERFAMILY Histone-fold 7 120 IPR009072 GO:0046982
Mtr4g1553 140 MobiDBLite consensus disorder prediction 96 140 - -
Mtr4g1553 140 Gene3D Histone, subunit A 1 139 IPR009072 GO:0046982
Mtr4g1553 140 Coils Coil 58 78 - -
Mtr4g1553 140 MobiDBLite consensus disorder prediction 96 131 - -
Mtr4g1553 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 6 75 IPR003958 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1553 7 130 CCAAT-HAP3 Transcription Factor Family AT3G53340 30.645 4.36e-11 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr4g1553 CBFD_NFYB_HMF 9.5e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1553 K02326 - gmx:100306382 177.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1553 4 27257977 27260108 Mtr4g1553 4 27257977 27260108 ECH