Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1552 ATGCCAAGGGGAAAGGCAAAATCTGAGACTGAGCCTGAAAAGCCAGTTGAATCTGATGAGAAGGTTGACCTTGAAGAGGAAAATGATCCCGAGGAAGAAATGGAAGAAGAGGTTGAGTATGAAGAAGTAGAAGAAGAGGAGGAAGTGGAAGAAATAGAAGAGGAGGTGGAAGAAGAAGAGGAGGACCCTGATGAGGAAGAGGAAGAAGAAGAGGAAGAGGAGGAGGAGGAAGAGGTCGAAGAAGTGGAAGAAGATGATGCCATGCAAAACCTTGATGATGATGAGAAGAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCACAAGTCTGAAGTCTATGTTGGTGGCATTCCTCTTGATGCCAAAAGTGAAGATTTGAAAGAATTTTGTGAGCGAATTGGGGAAGTTGTACAGGTTCGAATAATGAAAGGAAAAGATGCTTCTGAGAATAAGGGCTTTGCTTTTGTTACTTATAGAAATGTAGAACTGGCTTCTAAAGCCATTGAGGAGCTGAATAATACCGAATTTAAGGGTAGGAAAATAAAATGTTCTACATCTCAAGCAAAAAATCGTCTTTTTATTGGTAATATTCCTAGAAGCTGGGGCGAAAAAGACCTGAAGAAGGTTGTGACTGACATTGGACCTGGAGTTACTGCTGTTGAACTAGTCAAGGATATGAAGAACATTAGCAATAACCGTGGCTTTGCTTTTATCGACTATCATAATAATCAATGTGCTGAATATGGAAGGCAAAAGATGATGAGCCCGTCATTTAAGCTTGGTGACAATTCCCCAACAGTGAGCTGGGCTGACCCTAAAAATTCTGATTCCTCTGCTTCATCCCAGGTGAAGGCAGTATATGTGAAGAACCTTCCCAAGAATGTGACTCAAGAGCAGTTGAAGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTACCACCACCAAAGTCTGGTCAGGAAAAGAACAGAATCGGCTTCGTACATTTTGCAGAGAGATCAAATGCTATGAAAGCACTAAAAAACACTGAAAGATATGAATTAGATGGTCAAAATTTAGAGTGTTCTTTAGCAAAGCCACAGGCTGATCAGAAGGCCGTAGTATCAAATACACAGACGCAAGGATTGCTTCCAAGTTATCCCCCACCTGTTGGTTATGGTTTGGTTGGGAATCCATATGGTGCACTTGGTGCAGGATATGGTGCTCCTGGTCTTGCTCAGCCTTTGATGTATGGACCGGGTCAAACTCCTGGTGGAATGGCCATGATGCCGATGCTTCTGGCTGATGGACGCATCGGATATGTCTTGCAACAACCAGGATTGCAGCCACACGCCCCACACACCCCACACACCCCGCACACCCCGCACACCCCACATTCACATCAAAGAGGTGGCAGGAGTGGCGGCGGCGGTGGTGGGAGTGGTAGTGGCAACAGGAGTACAGGCAGTTCAAGTAAAGGAAGGCACAACAATGATAGTGGCCAAGGGCGCAGATACCGCCCATATTAG 1515 0.4482 MPRGKAKSETEPEKPVESDEKVDLEEENDPEEEMEEEVEYEEVEEEEEVEEIEEEVEEEEEDPDEEEEEEEEEEEEEEVEEVEEDDAMQNLDDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQADQKAVVSNTQTQGLLPSYPPPVGYGLVGNPYGALGAGYGAPGLAQPLMYGPGQTPGGMAMMPMLLADGRIGYVLQQPGLQPHAPHTPHTPHTPHTPHSHQRGGRSGGGGGGSGSGNRSTGSSSKGRHNNDSGQGRRYRPY* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1552 504 MobiDBLite consensus disorder prediction 440 504 - -
Mtr4g1552 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 251 IPR000504 GO:0003723
Mtr4g1552 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 182 IPR000504 GO:0003723
Mtr4g1552 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 355 IPR000504 GO:0003723
Mtr4g1552 504 MobiDBLite consensus disorder prediction 1 89 - -
Mtr4g1552 504 SUPERFAMILY RNA-binding domain, RBD 279 369 IPR035979 GO:0003676
Mtr4g1552 504 Gene3D - 3 190 IPR012677 -
Mtr4g1552 504 MobiDBLite consensus disorder prediction 475 492 - -
Mtr4g1552 504 MobiDBLite consensus disorder prediction 22 89 - -
Mtr4g1552 504 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 6 462 - -
Mtr4g1552 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 272 IPR000504 GO:0003723
Mtr4g1552 504 PANTHER RNA RECOGNITION MOTIF 6 462 - -
Mtr4g1552 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Mtr4g1552 504 CDD RRM_SF 112 184 - -
Mtr4g1552 504 MobiDBLite consensus disorder prediction 1 21 - -
Mtr4g1552 504 SUPERFAMILY RNA-binding domain, RBD 110 275 IPR035979 GO:0003676
Mtr4g1552 504 Gene3D - 191 271 IPR012677 -
Mtr4g1552 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 362 IPR000504 GO:0003723
Mtr4g1552 504 SMART rrm1_1 191 268 IPR000504 GO:0003723
Mtr4g1552 504 SMART rrm1_1 111 184 IPR000504 GO:0003723
Mtr4g1552 504 SMART rrm1_1 285 358 IPR000504 GO:0003723
Mtr4g1552 504 Coils Coil 31 86 - -
Mtr4g1552 504 SMART rrm2_1 285 358 IPR003954 GO:0003676
Mtr4g1552 504 SMART rrm2_1 111 184 IPR003954 GO:0003676
Mtr4g1552 504 Gene3D - 272 378 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1552 Mtr-Chr4 27250972 27255981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1552 126 445 Eukaryotic Initiation Factors Gene Family AT4G34110 25.714 4.83e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1552 K13161 - gmx:100806658 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1552 4 27250972 27255981 Mtr4g1552 4 27250972 27255981 ECH