Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1540 ATGGAAGATATCTTTCCACCTGGTTTTCGTTTCTTCCCAACTGAAGAAGAGCTTGTTAGCTTTTATCTAAATAATAAACTACAAGGAGTAACAAATGCTATAGATAGGGTTATTCCAGTCATTGATATCAATGGTGTAGAACCATGGAATCTCCCAACTCTTGCGGGAGAGCTTTGCCGCGAAGATAAAGAGCAATGGTTTTTCTTTTCACCAGGTCAAGAGAGAGAAGCAAGGGGAGGGAGACCTAATAGAACTACTGCTTGTGGATACTGGAAGGCAACAGGTTCTCCTGGTTATGTTTATTCTTCAGATAACAAAGTTATTGGGGTGAAGAAAACCATGGTTTTCTATAAAGGAAAAGCTCCAAGTGGAAGGAAAACAAAATGGAAGATGAATGAATACAGAGCCATTCAAGTCTCTAACCAATCCAACACTGCCACACCTCAGTTGAGGAGAGAATTCAGTTTGTGTCGAATATATGTAATATCAGGAAGCTTTCGAGCTTTTGATAGACGTCCATTAGAGAGAGAAAGAGTTGATCAATTACCGGTTAATGAGATTGATCAAAATCCATTTGGTGCCACATCTACTCATCAAAATGCAACAAGTTCATTTGAAATTTCTCAATTAGGGGGACTCCAAAGTACTCATATGCCACCAGAGGTTGTAGGAGGTTCAAATAGCACTAATTGGCATGTAAATAGTAACAATGAAAATAATGGTGATGAGGTTCAATTCCAAGAATCACTATGGGAATGGGACAGTGAACATTTTAATTGGTCCTAA 786 0.3868 MEDIFPPGFRFFPTEEELVSFYLNNKLQGVTNAIDRVIPVIDINGVEPWNLPTLAGELCREDKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGYVYSSDNKVIGVKKTMVFYKGKAPSGRKTKWKMNEYRAIQVSNQSNTATPQLRREFSLCRIYVISGSFRAFDRRPLERERVDQLPVNEIDQNPFGATSTHQNATSSFEISQLGGLQSTHMPPEVVGGSNSTNWHVNSNNENNGDEVQFQESLWEWDSEHFNWS* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1540 261 Gene3D NAC domain 14 165 IPR036093 GO:0003677|GO:0006355
Mtr4g1540 261 ProSiteProfiles NAC domain profile. 5 162 IPR003441 GO:0003677|GO:0006355
Mtr4g1540 261 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
Mtr4g1540 261 MobiDBLite consensus disorder prediction 214 239 - -
Mtr4g1540 261 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Mtr4g1540 261 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 5 260 - -
Mtr4g1540 261 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1540 Mtr-Chr4 27131182 27133605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1540 8 261 NAC Transcription Factor Family AT3G44350 51.765 3.69e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr4g1540 NAM 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1540 - - cam:101497878 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1540 4 27131182 27133605 Mtr4g1540 4 27131182 27133605 ECH
Mtr2g2896 2 42540567 42542420 Mtr4g1540 4 27131182 27133605 PCT