Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1522 ATGGAGATAAATGAATGTCAATCAGTTGAAATTGATGGATGCAAAGATATTTTTCTTGGTCAAGTTGTGAATAACAAAGATGAAGCTTATAACTTATATCAAGCACATGCCTTCAAAACAGGATTTAGTGTAAGAAAAGGGAGGGAGTTATATTATGATAATGAGAGAAAAATCACCCGTTTTAAAGAGTTTTACTGTTCCAAAGAAGGGTTTAAGAATAATGAATATGGAGGTGAAGTGGCTTATGAAAGAGCTGATTCAAGGGCAAATTGCAAAGCTATGGTGAGGTTTAATGTTAGCAAGGAAGGAGTTTGGAAAGTTACAAAGTTTGTATTAGATCATAATCATCAACTTGTACCTCCTGAACAAAGACATTTGTTGCGGTCCATGAGAAATATGTCAAATGTCAAAGGAGACCTCATAAAGTCTATGGTGAATTCTGGTATACGAGTTACAAATATTTGGAATTATTTAGGGGAAGAGGTCGGTGGATATAACAATCTTGGTATAACATTGAAAAATATGCATAATTATGTCTACACTGAAAAGTTGAAATTGATTGAAGTTGGGGATGCTCAATCTTTAGTAAATAACTTACAAAATAGACAAGCACAAGATCCTATGTTCTATTACAGTGTGCAGCTAGATCAGGAATCTCGTTTGACTAATGTCTTTTGGAGAGATGGTAAATCTAAAGTTGATTATGATTGCTTTGGGGATGTTGTGATATTTGACACTACTTATCGTACCAATAAGTATGACATGATCTGTGCCCCATTTGTTGGGATAAATCATCATTGGCAAAATGTCATGTTTGGTTGTGCTTTGTTGTTGGATGAAACTTCAATTTCTTTTAATTGGTTGTTTAAAGCATTTTTAGAGAGTATGGGAAACAAACAACCAAAAACAATATTTACAGATCAAGATCCAGCTATGGGCAAAGCAATTGGAGAAGTAATGCCAAATACACGTCATCGACTGTGTTTGTGGCATATATCAAAAAATGCTCCTTCACATTTGGGATCTCTCAATTCTAATAACAAGTTTCAAAGCTTATTTAATAAATGCATGACAGGTTGTGACTCAGAAGAAGAATTTCAAACCACTTGGGATGAGATGATGAATACATATCAACTTCATGGTCACAAATGGTTAAGAAGCATGTATGCAATTCGCGGCAAATGGAGCACGGCATATAGTAATCATGTATTTTCTGCTGGTATCAAATCTTCTCAAAAAAGTGAGAGTACAAATAGTGCTTTGGGAGATATTGCAGGAAAAACAACATGTCTCACACAATTTTTAGTGGCATTTGAGAAGATGGTGAGAAGGTGGCGACAATTAGAGGTTGAGAACGAATTCAAAAATAGTCAGAGTGCGCCTCCTCGTGTTATAAACAGTAGTGAAACTCTACGACATGCATCTGTGGTATATACTCACAAAATCTTTACACTTTTTTTAAATGAGTATCTTAATGGGGCAGGTGGAAGCACTTCCGTGGAGATTGGTCGATGTGATCATGTGTCATATCATGAAGTTGTGTTAAACATCATCCCCAATAAAAAGTATATCGTGGCTTTGGATTCATCCACTTCTATGGTTAGCTGCAGTTGTCACAAGTTCGAATCGATGGGCATTCTTTGCAGTCATGCTTTGCGGATTTACAATATTAAAGGTATTTTAAAAATACCTGACCAATACATCTTAACAAGATGGTCAAAAAATGCAAGGTCTGTGATTTATGAGCATGTAAATAAGAGTTCAGAAGAAGATTCGACCTCCAATTCAATGTCTGATGGTGATGATTCCGGTCTTCTTTACCGCAACGCTATTCTGAAGTCTTTATACAATTTAGTTTTGGAATCCCAGGAGGACAAAAAAGCACAAAAAATCATGTGGGAATTGCTTGATGTTGGAGTTAAGAGGGTTCGAGAATGTGTCAGCAAACCTGACTTAAATTCAACTAAAGAAAACATTGAGAACAATTTCTCACAAAATGAGGATAATGAAAGCTGTACAATTTTGAATCCTCGTTTCGCAAAGACGAAAGGAAGGTCTAAGAAACGTAATGAAGACTATGTAAGTAATTCTCAAGTGGGTGGAGTGGCAAATGTTCAAAATTGCACAAATGAACATTATACAAATGTTTATCCTTCATTTGATGCATCTCGACAGCAACAACATCCTTCAAGTTGGGGTTTAAATGCTACATCAACTTCATTTAGTAACTTGCTACATGGAATGAACTCGTTCAATTATTTCAGCCAGGAATCTTGTAATTTTGGTCAGATACCTCCAAGTAGCAATTATCAAGGTAGACAATGA 2325 0.3566 MEINECQSVEIDGCKDIFLGQVVNNKDEAYNLYQAHAFKTGFSVRKGRELYYDNERKITRFKEFYCSKEGFKNNEYGGEVAYERADSRANCKAMVRFNVSKEGVWKVTKFVLDHNHQLVPPEQRHLLRSMRNMSNVKGDLIKSMVNSGIRVTNIWNYLGEEVGGYNNLGITLKNMHNYVYTEKLKLIEVGDAQSLVNNLQNRQAQDPMFYYSVQLDQESRLTNVFWRDGKSKVDYDCFGDVVIFDTTYRTNKYDMICAPFVGINHHWQNVMFGCALLLDETSISFNWLFKAFLESMGNKQPKTIFTDQDPAMGKAIGEVMPNTRHRLCLWHISKNAPSHLGSLNSNNKFQSLFNKCMTGCDSEEEFQTTWDEMMNTYQLHGHKWLRSMYAIRGKWSTAYSNHVFSAGIKSSQKSESTNSALGDIAGKTTCLTQFLVAFEKMVRRWRQLEVENEFKNSQSAPPRVINSSETLRHASVVYTHKIFTLFLNEYLNGAGGSTSVEIGRCDHVSYHEVVLNIIPNKKYIVALDSSTSMVSCSCHKFESMGILCSHALRIYNIKGILKIPDQYILTRWSKNARSVIYEHVNKSSEEDSTSNSMSDGDDSGLLYRNAILKSLYNLVLESQEDKKAQKIMWELLDVGVKRVRECVSKPDLNSTKENIENNFSQNEDNESCTILNPRFAKTKGRSKKRNEDYVSNSQVGGVANVQNCTNEHYTNVYPSFDASRQQQHPSSWGLNATSTSFSNLLHGMNSFNYFSQESCNFGQIPPSSNYQGRQ* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1522 774 PANTHER OS12G0160900 PROTEIN 16 664 - -
Mtr4g1522 774 ProSiteProfiles Zinc finger SWIM-type profile. 523 559 IPR007527 GO:0008270
Mtr4g1522 774 Pfam SWIM zinc finger 523 554 IPR007527 GO:0008270
Mtr4g1522 774 SMART 26again6 534 561 IPR006564 GO:0008270
Mtr4g1522 774 Pfam FAR1 DNA-binding domain 32 120 IPR004330 -
Mtr4g1522 774 Pfam MULE transposase domain 241 335 IPR018289 -
Mtr4g1522 774 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 16 664 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1522 Mtr-Chr4 26929759 26932411 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr4g1522 MULE 3.7e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1522 - - lja:Lj4g3v2120630.1 1049.65