Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1515 ATGTCGGGCACCCGAACTCCTCCCGCCACCGCCGCGCCGGACCAGATCATGCAGCAACGTCAACTCCCTTTCTCCTCCATGAAACCTCCCTTTCTCGCCGCCGCTGATTATCACCGCTTCGCTCCTGACCACCGCCGGAATCAAGACCTAGAAACTGAAGCTATTGTTGTTAAAACTCCTCAATTGAAGCGGAAGAGTGAAGCAGCTGATTTTGAAGCTGATTCAGGTGATAGGATGACTCCTGGGTCCACTGCAGCAGCCAATAGTTCTGTTCAGACGCCTGTATCTGGAAAGGCGGGGAAAGGAGGAAAATCCTCTAGGATGACAAAATGCAACAGATCTGGAACTCAAACCCCTGGCTCAAATATTGGTTCTCCTTCAGGAAATAATCTCACCCCTGCTGGTCCATGTCGATATGACAGCTCATTAGGTCTGTTGACAAAAAAGTTCATCGCTTTAATAAAACAAGCAGAGGATGGTATTCTTGATCTAAATAATGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATTACAAATGTTCTTGAAGGAATTGGCCTTATAGAAAAAAAGCTCAAGAACAGAATTCAGTGGAAGGGGCTGGATGTTTCAAAACCAGGGGAGGCCGATGATAGTTTTGCTAGTTTACAGGCAGAAATTGAAAATTTAACAATTGAGGAACGCCGGTTGGATGAACAAATAAGGGAGATGCAAGAAAGACTACGGAATCTCAGCGAAGATGAAAATAATGAGAAGTTTCTTTTTGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGTACCACTTTGGAAGTACCTGATCCTGATGAGGCTGTTGATTATCCCCAGAGAAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATCAACGGTGTTGATGTTGCATCCAAATTTCCACCCAGTCCAGAAGTTAACAAAGTTAACAAGGATCAATCAACCGTGGTCCCAGAAGATAAAGGGAAGGAAATAGAAGTGCAGAGACAAGATGGTGAAGGGCCTAGTTCAGATCTTAATAACAATCACGACTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGATGCTGATTATTGGCTTTTATCTGATGCCGATGTTAGCATAACCGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTCGAAGCACTTCAAGAAGAATATTGTATGGCTCGTGAGCAATCTACAACCCCAAATCATGCTTCAAATATTGGTGAAGTGCCTTCTGCATCCAACCCTACTGTAGGATGA 1383 0.4382 MSGTRTPPATAAPDQIMQQRQLPFSSMKPPFLAAADYHRFAPDHRRNQDLETEAIVVKTPQLKRKSEAADFEADSGDRMTPGSTAAANSSVQTPVSGKAGKGGKSSRMTKCNRSGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFIALIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSKPGEADDSFASLQAEIENLTIEERRLDEQIREMQERLRNLSEDENNEKFLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVASKFPPSPEVNKVNKDQSTVVPEDKGKEIEVQRQDGEGPSSDLNNNHDFVSGIMKIVPSDVASDADYWLLSDADVSITDMWRTEPGVEWNELEALQEEYCMAREQSTTPNHASNIGEVPSASNPTVG* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1515 460 MobiDBLite consensus disorder prediction 437 460 - -
Mtr4g1515 460 PANTHER TRANSCRIPTION FACTOR E2FB 16 447 - -
Mtr4g1515 460 Coils Coil 154 174 - -
Mtr4g1515 460 MobiDBLite consensus disorder prediction 1 20 - -
Mtr4g1515 460 Pfam E2F/DP family winged-helix DNA-binding domain 140 203 IPR003316 GO:0005667|GO:0006355
Mtr4g1515 460 MobiDBLite consensus disorder prediction 43 74 - -
Mtr4g1515 460 MobiDBLite consensus disorder prediction 43 133 - -
Mtr4g1515 460 MobiDBLite consensus disorder prediction 81 96 - -
Mtr4g1515 460 Pfam E2F transcription factor CC-MB domain 219 319 IPR032198 GO:0046983
Mtr4g1515 460 MobiDBLite consensus disorder prediction 107 133 - -
Mtr4g1515 460 PANTHER TRANSCRIPTION FACTOR E2F 16 447 IPR015633 GO:0000978|GO:0006357
Mtr4g1515 460 SUPERFAMILY E2F-DP heterodimerization region 217 320 IPR037241 -
Mtr4g1515 460 Gene3D - 210 320 - -
Mtr4g1515 460 SUPERFAMILY "Winged helix" DNA-binding domain 138 201 IPR036390 -
Mtr4g1515 460 Coils Coil 216 253 - -
Mtr4g1515 460 Gene3D - 132 205 IPR036388 -
Mtr4g1515 460 CDD E2F_DD 214 320 IPR032198 GO:0046983
Mtr4g1515 460 SMART E2F_TDP_2 138 203 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1515 Mtr-Chr4 26843393 26849479 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1515 19 433 E2F-DP Transcription Factor Family AT5G22220 57.763 1.18e-155 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mtr4g1515 E2F_CC-MB 3.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1515 K06620 - gmx:100819817 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1515 4 26843393 26849479 Mtr4g1515 4 26843393 26849479 ECH