Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1493 ATGCCGCCGAAGAGGTCATCCAAAGGAAAACAAAAAATTGAGTTGAAAAAAATTGAGAAAAAGGATGATCTCTTTGTTGCATTTACAACGAGAAAGTCTGGAATTTTCAACAAGGCCTCTGAGTTAACAACACTTACAGGGGCCTCAGTTGATATTCTCATGCTTTCTCCAACGGGAAAACCATTTTGTTATGGAGATCCGTCTTCGGAATCTATAACAAAAACAATTTTGAATGAAAATCCTTCAATGGAAGAGGAAATGATGAAACCTGAGATTATAGAGCAAAATGAAAAAAATGATGATCTTTTGGATAAAAAGCATGTTGCGGAAGCACAACGTAAAAATTTGAAGATGATGGAAACTTCTGGATATTGGTCGACAACAAAGGACCAATATGATCAAGTGAAAGAAATTGACAAATCCTTAGTTGCTGTTACAAATAAATTGATAACCAATGTCTTGAAAACTGGAGGAGAGATTCACCCTGATGCAATTTCTACCATTGAGGAACTGAATGGAGTCAAAACAAATCTTCCTTATGTCTTTGAGGACAACACCAAAGATCATGAAGTTGGTGCAAGTAAAGATATGGTTGCTAACGCTTCTCAAGACATAGCTACAAAAAAATCACAAGGAGTCAACCTTATTGGTGTAAGTGGAATAGGATATGGAAGTGGTGTTGATCATACTTCTCCAGATATATGA 705 0.3617 MPPKRSSKGKQKIELKKIEKKDDLFVAFTTRKSGIFNKASELTTLTGASVDILMLSPTGKPFCYGDPSSESITKTILNENPSMEEEMMKPEIIEQNEKNDDLLDKKHVAEAQRKNLKMMETSGYWSTTKDQYDQVKEIDKSLVAVTNKLITNVLKTGGEIHPDAISTIEELNGVKTNLPYVFEDNTKDHEVGASKDMVANASQDIATKKSQGVNLIGVSGIGYGSGVDHTSPDI* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1493 234 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mtr4g1493 234 CDD MADS 26 62 - -
Mtr4g1493 234 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mtr4g1493 234 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mtr4g1493 234 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mtr4g1493 234 PANTHER MADS BOX PROTEIN 7 141 - -
Mtr4g1493 234 SUPERFAMILY SRF-like 9 78 IPR036879 GO:0003677|GO:0046983
Mtr4g1493 234 Coils Coil 92 112 - -
Mtr4g1493 234 Gene3D - 21 91 IPR036879 GO:0003677|GO:0046983
Mtr4g1493 234 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mtr4g1493 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mtr4g1493 234 PANTHER AGAMOUS-LIKE 58-RELATED 7 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1493 Mtr-Chr4 26432663 26434076 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1493 5 199 Type I MADS-box Gene Family AT5G60440 30.542 5.01e-20 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr4g1493 SRF-TF 2.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1493 - K12412 mtr:MTR_3g104630 97.8265